| Patient A | Patient B | Pig unwashed | Pig washed 1 | Pig washed 2 | Pig washed 3 | Pig washed pooled |
---|---|---|---|---|---|---|---|
Host filtering using Bowtie 2 alignment | |||||||
 Host-aligned read percentage | 55.68 % | 22.51 % | 14.20 % | 10.99 % | 43.98 % | 11.07 % | N/A |
Scaffolds | |||||||
 Scaffold N50 | 29,787 | 45,917 | 6352 | 6835 | 22,475 | 36,156 | 4883 |
 Largest scaffold | 509386 | 794311 | 88,812 | 681,477 | 423,133 | 809,115 | 299,570 |
 Total assembled bases | 68,937,519 | 61,661,613 | 69,459,333 | 68,875,212 | 61,832,214 | 56,344,534 | 75,837,484 |
 No of scaffolds | 99,178 | 66,591 | 47,952 | 149,238 | 83,245 | 26,086 | 212,580 |
Scaffolds (≥500 bp) | |||||||
 Major scaffold N50 | 43,122 | 62,417 | 7574 | 17,034 | 30,929 | 40,825 | - |
 Largest scaffold | 509,386 | 794,311 | 88,812 | 681,477 | 423,133 | 809,115 | - |
 Total assembled bases | 56,795,385 | 53,697,990 | 62,853,857 | 47,516,449 | 52,301,800 | 53,472,496 | - |
 No of scaffolds | 4276 | 3157 | 17236 | 7586 | 5102 | 4269 | - |