Table 2 BLASR/LAST read mapping statistics to genus and species levels from bacterial and viral reads
Mapping tool | Dataset | Reads aligning to genus | Bases aligning to genus | Reads aligning to species | Bases aligning to species | Reads aligning to non-genus | Bases aligning to non-genus | Bases aligning to genus/bases aligning to non-genus | Genus | Species | Strain |
|---|---|---|---|---|---|---|---|---|---|---|---|
BLASR | Lister | 291 | 189590 | 151 | 97410 | 172 | 96260 | 1.97 | Orthopoxvirus | Vaccinia | Lister |
MVA | 25 | 9634 | 21 | 8381 | 12 | 2951 | 3.26 | Orthopoxvirus | Vaccinia | MVA | |
Cowpox | 56 | 23036 | 56 | 23036 | 14 | 2533 | 9.09 | Orthopoxvirus | Cowpox | - | |
E. coli | 19 | 15485 | 16 | 12640 | 7 | 2083 | 7.43 | Shigella | coli | - | |
LAST | Lister | 151 | 140099 | 29 | 26967 | 308 | 274216 | 0.51 | Orthopoxvirus | Vaccinia | MVA |
MVA | 44 | 37511 | 43 | 36507 | 21 | 18400 | 2.04 | Orthopoxvirus | Vaccinia | MVA | |
Cowpox | 89 | 72375 | 89 | 72375 | 50 | 41077 | 1.76 | Orthopoxvirus | Cowpox | - | |
E. coli | 17 | 20399 | 17 | 20399 | 32 | 35661 | 0.57 | Escherichia | coli | - |