Table 1 Assembly and annotation of the ginkgo genome
Category | Number | N50 (bp) | Size (bp) | Percentage of the assembly (%) | |
|---|---|---|---|---|---|
Contigs | 6,990,752 | 48,207 | 10,115,209,138 | -- | |
Scaffolds | 6,459,773 | 1,358,237 | 10,608,657,252 | 100.00 | |
Repetitive sequence | -- | -- | 8,124,064,469 | 76.58 | |
Transposable elements | LTR | -- | -- | 6,434,519,114 | 60.65 |
DNA | -- | -- | 354,935,994 | 3.34 | |
LINE | -- | -- | 460,463,526 | 4.34 | |
SINE | -- | -- | 261,728 | 0.00 | |
Unknown | -- | -- | 2,694,184,164 | 25.39 | |
Annotated genes | 41,840 | -- | 26,829/279/7884a | 10.58 | |