Fig. 2From: Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasetsSnapshots from a Staphylococcus aureus simulation. Here, we show three early snapshots (1, 5, and 10) and three taken at intervals along a 1000-frame flocking simulation (250, 500, and 1000). Agents in green represent genes from the recombined region, whereas those in red are from the core genome. Specific parameters chosen here included: DIMENSIONS = 2500, BOUNDARY = 1, INIT_VELOCITY = 50, COHESION_FACTOR = 5, SEPARATION_DISTANCE = 5, REPEL_FACTOR = 10, ALIGNMENT_FACTOR = 5, ITERATIONS = 1000, RADIUS = 500, VELOCITY_LIMIT = 50, MINPTS = 20, XI = 0.15Back to article page