Table 4 Summary statistics of key parameters for 13 reptile genomes
From: Draft genome of the leopard gecko, Eublepharis macularius
Species | Common name | Sequencing technology | Sequence coverage | Assembly size (Gb) | Contig N50 (kb) | Scaffold N50 (kb) | References |
|---|---|---|---|---|---|---|---|
Anolis carolinensis | Green anole lizard | Sanger | 6.0X | 1.78 | 79.9 | 4033 | [5] |
Alligator sinensis | Chinese alligator | NGS | 109.0X | 2.30 | 23.4 | 2188 | [8] |
Chrysemys picta bellii | Western painted turtle | Sanger + NGS | 18.0X | 2.59 | 11.9 | 5212 | [13] |
Chelonia mydas | Green sea turtle | NGS | 82.3X | 2.24 | 20.4 | 3778 | [11] |
Pelodiscus sinensis | Soft-shell turtle | NGS | 105.6X | 2.21 | 21.9 | 3331 | [11] |
Python molurus bivittatus | Burmese python | NGS | 20.0X | 1.44 | 10.7 | 208 | [6] |
Ophiophagus hannah | King cobra | NGS | 28.0X | 1.66 | 4.0 | 226 | [7] |
Alligator mississippiensis | American alligator | NGS | 156.0X | 2.17 | 7.0 | 509 | [10] |
Gavialis gangeticus | Indian gharial | NGS | 81.0X | 2.88 | 14.2 | 127 | [10] |
Crocodylus porosus | Saltwater crocodile | NGS | 74.0X | 2.12 | 32.8 | 205 | [10] |
Gekko japonicus | Japanese gecko | NGS | 131.3X | 2.55 | 21.1 | 685 | [4] |
Pogona vitticeps | Australian dragon lizard | NGS | 179.1X | 1.82 | 31.3 | 2290 | [12] |
Eublepharis macularius | Leopard gecko | NGS | 135.8X | 2.02 | 20.0 | 664 |