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Table 1 Summary statistics of leopard gecko sequence data derived from paired-end sequencing of seven insert libraries using an Illumina HiSeq 2000 platform

From: Draft genome of the leopard gecko, Eublepharis macularius

Library insert size (bp)

# Lane

Read length (bp)

Raw data

High-quality data

Total bases (Gb)

Sequencing depth (X)

Total bases (Gb)

Sequencing depth (X)

170

2

100

60.25

27.03

57.20

25.66

500

2

150

76.08

34.13

59.36

26.63

800

1

150

27.84

12.49

15.90

7.13

2000

3

49

58.04

26.04

34.88

15.65

5000

2

49

33.96

15.24

10.99

4.93

10,000

2

49

29.17

13.09

5.09

2.28

20,000

1

49

17.33

7.78

4.07

1.83

Total

13

 

302.66

135.78

187.49

84.11

  1. Note: Sequencing depth was calculated based on a genome size of 2.23 Gb. High-quality data were obtained by filtering raw data for low-quality and duplicate reads and correcting sequencing errors