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Table 1 Summary statistics of leopard gecko sequence data derived from paired-end sequencing of seven insert libraries using an Illumina HiSeq 2000 platform

From: Draft genome of the leopard gecko, Eublepharis macularius

Library insert size (bp) # Lane Read length (bp) Raw data High-quality data
Total bases (Gb) Sequencing depth (X) Total bases (Gb) Sequencing depth (X)
170 2 100 60.25 27.03 57.20 25.66
500 2 150 76.08 34.13 59.36 26.63
800 1 150 27.84 12.49 15.90 7.13
2000 3 49 58.04 26.04 34.88 15.65
5000 2 49 33.96 15.24 10.99 4.93
10,000 2 49 29.17 13.09 5.09 2.28
20,000 1 49 17.33 7.78 4.07 1.83
Total 13   302.66 135.78 187.49 84.11
  1. Note: Sequencing depth was calculated based on a genome size of 2.23 Gb. High-quality data were obtained by filtering raw data for low-quality and duplicate reads and correcting sequencing errors