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Fig. 4 | GigaScience

Fig. 4

From: The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes

Fig. 4

Haplotype extraction. Haplotypes can easily be retrieved from Long Fragment Read (LFR) samples starting from the variant file with file name format var-GS0000#####-ASM.tsv_with_wellcount_exc.txt. Following the steps provided in the figure will result in the highest quality haplotypes with an extremely low error rate, but with some loss of real variants. LFR haplotype performance using these filters has previously been described [3, 16]

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