TY - JOUR AU - Pope, E. AU - Hays, G. AU - Thys, T. AU - Doyle, T. AU - Sims, D. AU - Queiroz, N. AU - Hobson, V. AU - Kubicek, L. AU - Houghton, J. R. PY - 2010 DA - 2010// TI - The biology and ecology of the ocean sunfish Mola mola: a review of current knowledge and future research perspectives JO - Rev Fish Biol Fish VL - 20 UR - https://doi.org/10.1007/s11160-009-9155-9 DO - 10.1007/s11160-009-9155-9 ID - Pope2010 ER - TY - BOOK AU - Fraser-Brunner, A. PY - 1951 DA - 1951// TI - The Ocean Sunfishes (Family Molidae), vol. 1 ID - Fraser-Brunner1951 ER - TY - BOOK AU - Powell, D. C. PY - 2001 DA - 2001// TI - A fascination for fish: adventures of an underwater pioneer PB - University of California Press CY - Berkeley ID - Powell2001 ER - TY - JOUR AU - Nakatsubo, T. AU - Hirose, H. PY - 2007 DA - 2007// TI - Growth of captive ocean sunfish, Mola mola JO - Suisan Zoshoku VL - 55 ID - Nakatsubo2007 ER - TY - JOUR AU - Cleland, J. PY - 1862 DA - 1862// TI - On the anatomy of the short sunfish (Orthragoriscus mola) JO - Nat Hist Rev (Lond) VL - 2 ID - Cleland1862 ER - TY - JOUR AU - Watanabe, Y. AU - Sato, K. PY - 2008 DA - 2008// TI - Functional dorsoventral symmetry in relation to lift-based swimming in the ocean sunfish Mola mola JO - PLoS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0003446 DO - 10.1371/journal.pone.0003446 ID - Watanabe2008 ER - TY - JOUR AU - Nakae, M. AU - Sasaki, K. PY - 2009 DA - 2009// TI - Peripheral nervous system of the ocean sunfish Mola mola (Tetraodontiformes: Molidae) JO - Ichthyol Res VL - 53 UR - https://doi.org/10.1007/s10228-006-0339-1 DO - 10.1007/s10228-006-0339-1 ID - Nakae2009 ER - TY - JOUR AU - Luo, R. AU - Liu, B. AU - Xie, Y. AU - Li, Z. AU - Huang, W. AU - Yuan, J. PY - 2012 DA - 2012// TI - SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler JO - Gigascience VL - 1 UR - https://doi.org/10.1186/2047-217X-1-18 DO - 10.1186/2047-217X-1-18 ID - Luo2012 ER - TY - JOUR AU - Yang, Z. AU - Rannala, B. PY - 2006 DA - 2006// TI - Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds JO - Mol Biol Evol VL - 23 UR - https://doi.org/10.1093/molbev/msj024 DO - 10.1093/molbev/msj024 ID - Yang2006 ER - TY - JOUR AU - Near, T. J. AU - Dornburg, A. AU - Eytan, R. I. AU - Keck, B. P. AU - Smith, W. L. AU - Kuhn, K. L. PY - 2013 DA - 2013// TI - Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes JO - Proc Natl Acad Sci U S A VL - 110 UR - https://doi.org/10.1073/pnas.1304661110 DO - 10.1073/pnas.1304661110 ID - Near2013 ER - TY - JOUR AU - Arcila, D. AU - Alexander Pyron, R. AU - Tyler, J. C. AU - Orti, G. AU - Betancur, R. R. PY - 2015 DA - 2015// TI - An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae) JO - Mol Phylogenet Evol VL - 82 Pt A UR - https://doi.org/10.1016/j.ympev.2014.10.011 DO - 10.1016/j.ympev.2014.10.011 ID - Arcila2015 ER - TY - JOUR AU - Wu, C. AU - Zhang, D. AU - Kan, M. AU - Lv, Z. AU - Zhu, A. AU - Su, Y. PY - 2014 DA - 2014// TI - The draft genome of the large yellow croaker reveals well-developed innate immunity JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms6227 DO - 10.1038/ncomms6227 ID - Wu2014 ER - TY - JOUR AU - Li, H. AU - Durbin, R. PY - 2011 DA - 2011// TI - Inference of human population history from individual whole-genome sequences JO - Nature VL - 475 UR - https://doi.org/10.1038/nature10231 DO - 10.1038/nature10231 ID - Li2011 ER - TY - JOUR AU - Barash, M. S. PY - 2011 DA - 2011// TI - Environmental changes in the neogene and the biotic response JO - Oceanology VL - 51 UR - https://doi.org/10.1134/S0001437011020019 DO - 10.1134/S0001437011020019 ID - Barash2011 ER - TY - JOUR AU - Hayward, B. W. AU - Kawagata, S. AU - Grenfell, H. R. AU - Sabaa, A. T. AU - O’Neill, T. PY - 2007 DA - 2007// TI - Last global extinction in the deep sea during the mid‐Pleistocene climate transition JO - Paleoceanography VL - 22 UR - https://doi.org/10.1029/2007PA001424 DO - 10.1029/2007PA001424 ID - Hayward2007 ER - TY - JOUR AU - Hayward, B. W. PY - 2002 DA - 2002// TI - Late Pliocene to Middle Pleistocene extinctions of deep-sea benthic foraminifera (“Stilostomella extinction”) in the southwest Pacific JO - J Foraminiferal Res VL - 32 UR - https://doi.org/10.2113/32.3.274 DO - 10.2113/32.3.274 ID - Hayward2002 ER - TY - JOUR AU - Fuentes, E. N. AU - Valdes, J. A. AU - Molina, A. AU - Bjornsson, B. T. PY - 2013 DA - 2013// TI - Regulation of skeletal muscle growth in fish by the growth hormone--insulin-like growth factor system JO - Gen Comp Endocrinol VL - 192 UR - https://doi.org/10.1016/j.ygcen.2013.06.009 DO - 10.1016/j.ygcen.2013.06.009 ID - Fuentes2013 ER - TY - JOUR AU - Mommsen, T. P. PY - 2001 DA - 2001// TI - Paradigms of growth in fish JO - Comp Biochem Physiol B Biochem Mol Biol VL - 129 UR - https://doi.org/10.1016/S1096-4959(01)00312-8 DO - 10.1016/S1096-4959(01)00312-8 ID - Mommsen2001 ER - TY - JOUR AU - Wood, A. W. AU - Duan, C. AU - Bern, H. A. PY - 2005 DA - 2005// TI - Insulin-like growth factor signaling in fish JO - Int Rev Cytol VL - 243 UR - https://doi.org/10.1016/S0074-7696(05)43004-1 DO - 10.1016/S0074-7696(05)43004-1 ID - Wood2005 ER - TY - JOUR AU - Brooks, A. J. AU - Waters, M. J. PY - 2010 DA - 2010// TI - The growth hormone receptor: mechanism of activation and clinical implications JO - Nat Rev Endocrinol VL - 6 UR - https://doi.org/10.1038/nrendo.2010.123 DO - 10.1038/nrendo.2010.123 ID - Brooks2010 ER - TY - JOUR AU - Yang, Z. PY - 1997 DA - 1997// TI - PAML: a program package for phylogenetic analysis by maximum likelihood JO - Comput Appl Biosci VL - 13 ID - Yang1997 ER - TY - JOUR AU - Bass, S. H. AU - Mulkerrin, M. G. AU - Wells, J. A. PY - 1991 DA - 1991// TI - A systematic mutational analysis of hormone-binding determinants in the human growth hormone receptor JO - Proc Natl Acad Sci U S A VL - 88 UR - https://doi.org/10.1073/pnas.88.10.4498 DO - 10.1073/pnas.88.10.4498 ID - Bass1991 ER - TY - JOUR AU - Clackson, T. AU - Wells, J. A. PY - 1995 DA - 1995// TI - A hot spot of binding energy in a hormone-receptor interface JO - Science VL - 267 UR - https://doi.org/10.1126/science.7529940 DO - 10.1126/science.7529940 ID - Clackson1995 ER - TY - JOUR AU - Garrett, T. P. AU - McKern, N. M. AU - Lou, M. AU - Frenkel, M. J. AU - Bentley, J. D. AU - Lovrecz, G. O. AU - Elleman, T. C. AU - Cosgrove, L. J. AU - Ward, C. W. PY - 1998 DA - 1998// TI - Crystal structure of the first three domains of the type-1 insulin-like growth factor receptor JO - Nature VL - 394 UR - https://doi.org/10.1038/28668 DO - 10.1038/28668 ID - Garrett1998 ER - TY - JOUR AU - Raz, E. AU - Schejter, E. D. AU - Shilo, B. Z. PY - 1991 DA - 1991// TI - Interallelic complementation among DER/flb alleles: implications for the mechanism of signal transduction by receptor-tyrosine kinases JO - Genetics VL - 129 ID - Raz1991 ER - TY - JOUR AU - Radha, V. AU - Nambirajan, S. AU - Swarup, G. PY - 1996 DA - 1996// TI - Association of Lyn tyrosine kinase with the nuclear matrix and cell-cycle-dependent changes in matrix-associated tyrosine kinase activity JO - Eur J Biochem VL - 236 UR - https://doi.org/10.1111/j.1432-1033.1996.00352.x DO - 10.1111/j.1432-1033.1996.00352.x ID - Radha1996 ER - TY - JOUR AU - Abuzzahab, M. J. AU - Schneider, A. AU - Goddard, A. AU - Grigorescu, F. AU - Lautier, C. AU - Keller, E. PY - 2003 DA - 2003// TI - IGF-I receptor mutations resulting in intrauterine and postnatal growth retardation JO - N Engl J Med VL - 349 UR - https://doi.org/10.1056/NEJMoa010107 DO - 10.1056/NEJMoa010107 ID - Abuzzahab2003 ER - TY - JOUR AU - Lee, J. AU - Pilch, P. F. PY - 1994 DA - 1994// TI - The insulin receptor: structure, function, and signaling JO - Am J Physiol Cell Physiol VL - 266 ID - Lee1994 ER - TY - JOUR AU - Ardon, O. AU - Procter, M. AU - Tvrdik, T. AU - Longo, N. AU - Mao, R. PY - 2014 DA - 2014// TI - Sequencing analysis of insulin receptor defects and detection of two novel mutations in INSR gene JO - Mol Genet Metab Rep VL - 1 UR - https://doi.org/10.1016/j.ymgmr.2013.12.006 DO - 10.1016/j.ymgmr.2013.12.006 ID - Ardon2014 ER - TY - JOUR AU - Han, L. AU - Grodzinsky, A. J. AU - Ortiz, C. PY - 2011 DA - 2011// TI - Nanomechanics of the Cartilage Extracellular Matrix JO - Annu Rev Mater Res VL - 41 UR - https://doi.org/10.1146/annurev-matsci-062910-100431 DO - 10.1146/annurev-matsci-062910-100431 ID - Han2011 ER - TY - JOUR AU - Velleman, S. G. PY - 2000 DA - 2000// TI - The role of the extracellular matrix in skeletal development JO - Poult Sci VL - 79 UR - https://doi.org/10.1093/ps/79.7.985 DO - 10.1093/ps/79.7.985 ID - Velleman2000 ER - TY - JOUR AU - Thomas, J. T. AU - Ayad, S. AU - Grant, M. E. PY - 1994 DA - 1994// TI - Cartilage collagens: strategies for the study of their organisation and expression in the extracellular matrix JO - Ann Rheum Dis VL - 53 UR - https://doi.org/10.1136/ard.53.8.488 DO - 10.1136/ard.53.8.488 ID - Thomas1994 ER - TY - JOUR AU - Komori, T. AU - Yagi, H. AU - Nomura, S. AU - Yamaguchi, A. AU - Sasaki, K. AU - Deguchi, K. PY - 1997 DA - 1997// TI - Targeted disruption of Cbfa1 results in a complete lack of bone formation owing to maturational arrest of osteoblasts JO - Cell VL - 89 UR - https://doi.org/10.1016/S0092-8674(00)80258-5 DO - 10.1016/S0092-8674(00)80258-5 ID - Komori1997 ER - TY - JOUR AU - Kawasaki, K. PY - 2011 DA - 2011// TI - The SCPP gene family and the complexity of hard tissues in vertebrates JO - Cells Tissues Organs VL - 194 UR - https://doi.org/10.1159/000324225 DO - 10.1159/000324225 ID - Kawasaki2011 ER - TY - JOUR AU - Venkatesh, B. AU - Lee, A. P. AU - Ravi, V. AU - Maurya, A. K. AU - Lian, M. M. AU - Swann, J. B. PY - 2014 DA - 2014// TI - Elephant shark genome provides unique insights into gnathostome evolution JO - Nature VL - 505 UR - https://doi.org/10.1038/nature12826 DO - 10.1038/nature12826 ID - Venkatesh2014 ER - TY - JOUR AU - Kawasaki, K. PY - 2009 DA - 2009// TI - The SCPP gene repertoire in bony vertebrates and graded differences in mineralized tissues JO - Dev Genes Evol VL - 219 UR - https://doi.org/10.1007/s00427-009-0276-x DO - 10.1007/s00427-009-0276-x ID - Kawasaki2009 ER - TY - JOUR AU - Goldsmith, M. I. AU - Fisher, S. AU - Waterman, R. AU - Johnson, S. L. PY - 2003 DA - 2003// TI - Saltatory control of isometric growth in the zebrafish caudal fin is disrupted in long fin and rapunzel mutants JO - Dev Biol VL - 259 UR - https://doi.org/10.1016/S0012-1606(03)00186-6 DO - 10.1016/S0012-1606(03)00186-6 ID - Goldsmith2003 ER - TY - JOUR AU - Jain, I. AU - Stroka, C. AU - Yan, J. AU - Huang, W. M. AU - Iovine, M. K. PY - 2007 DA - 2007// TI - Bone growth in zebrafish fins occurs via multiple pulses of cell proliferation JO - Dev Dyn VL - 236 UR - https://doi.org/10.1002/dvdy.21270 DO - 10.1002/dvdy.21270 ID - Jain2007 ER - TY - JOUR AU - Zakany, J. AU - Duboule, D. PY - 2007 DA - 2007// TI - The role of Hox genes during vertebrate limb development JO - Curr Opin Genet Dev VL - 17 UR - https://doi.org/10.1016/j.gde.2007.05.011 DO - 10.1016/j.gde.2007.05.011 ID - Zakany2007 ER - TY - JOUR AU - Alexander, T. AU - Nolte, C. AU - Krumlauf, R. PY - 2009 DA - 2009// TI - Hox genes and segmentation of the hindbrain and axial skeleton JO - Annu Rev Cell Dev Biol VL - 25 UR - https://doi.org/10.1146/annurev.cellbio.042308.113423 DO - 10.1146/annurev.cellbio.042308.113423 ID - Alexander2009 ER - TY - JOUR AU - Fromental-Ramain, C. AU - Warot, X. AU - Messadecq, N. AU - LeMeur, M. AU - Dolle, P. AU - Chambon, P. PY - 1996 DA - 1996// TI - Hoxa-13 and Hoxd-13 play a crucial role in the patterning of the limb autopod JO - Development VL - 122 ID - Fromental-Ramain1996 ER - TY - JOUR AU - Swinehart, I. T. AU - Schlientz, A. J. AU - Quintanilla, C. A. AU - Mortlock, D. P. AU - Wellik, D. M. PY - 2013 DA - 2013// TI - Hox11 genes are required for regional patterning and integration of muscle, tendon and bone JO - Development VL - 140 UR - https://doi.org/10.1242/dev.096693 DO - 10.1242/dev.096693 ID - Swinehart2013 ER - TY - JOUR AU - Hoegg, S. AU - Boore, J. L. AU - Kuehl, J. V. AU - Meyer, A. PY - 2007 DA - 2007// TI - Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-317 DO - 10.1186/1471-2164-8-317 ID - Hoegg2007 ER - TY - JOUR AU - Tanaka, M. AU - Hale, L. A. AU - Amores, A. AU - Yan, Y. L. AU - Cresko, W. A. AU - Suzuki, T. AU - Postlethwait, J. H. PY - 2005 DA - 2005// TI - Developmental genetic basis for the evolution of pelvic fin loss in the pufferfish Takifugu rubripes JO - Dev Biol VL - 281 UR - https://doi.org/10.1016/j.ydbio.2005.02.016 DO - 10.1016/j.ydbio.2005.02.016 ID - Tanaka2005 ER - TY - JOUR AU - Ohlsson, C. AU - Bengtsson, B. A. AU - Isaksson, O. G. AU - Andreassen, T. T. AU - Slootweg, M. C. PY - 1998 DA - 1998// TI - Growth hormone and bone JO - Endocr Rev VL - 19 ID - Ohlsson1998 ER - TY - JOUR AU - Luo, R. AU - Liu, B. AU - Xie, Y. AU - Li, Z. AU - Huang, W. AU - Yuan, J. PY - 2012 DA - 2012// TI - SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler JO - GigaScience VL - 1 UR - https://doi.org/10.1186/2047-217X-1-18 DO - 10.1186/2047-217X-1-18 ID - Luo2012 ER - TY - JOUR AU - Parra, G. AU - Bradnam, K. AU - Korf, I. PY - 2007 DA - 2007// TI - CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm071 DO - 10.1093/bioinformatics/btm071 ID - Parra2007 ER - TY - JOUR AU - Simao, F. A. AU - Waterhouse, R. M. AU - Ioannidis, P. AU - Kriventseva, E. V. AU - Zdobnov, E. M. PY - 2015 DA - 2015// TI - BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btv351 DO - 10.1093/bioinformatics/btv351 ID - Simao2015 ER - TY - BOOK AU - Liu, B. AU - Shi, Y. AU - Yuan, J. AU - Hu, X. AU - Zhang, H. AU - Li, N. PY - 2013 DA - 2013// TI - Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects ID - Liu2013 ER - TY - JOUR AU - Benson, G. PY - 1999 DA - 1999// TI - Tandem repeats finder: a program to analyze DNA sequences JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.2.573 DO - 10.1093/nar/27.2.573 ID - Benson1999 ER - TY - JOUR AU - Tarailo-Graovac, M. AU - Chen, N. PY - 2009 DA - 2009// TI - Using RepeatMasker to identify repetitive elements in genomic sequences JO - Curr Protoc Bioinform VL - 25 ID - Tarailo-Graovac2009 ER - TY - JOUR AU - Bao, W. AU - Kojima, K. K. AU - Kohany, O. PY - 2015 DA - 2015// TI - Repbase Update, a database of repetitive elements in eukaryotic genomes JO - Mob DNA VL - 6 UR - https://doi.org/10.1186/s13100-015-0041-9 DO - 10.1186/s13100-015-0041-9 ID - Bao2015 ER - TY - JOUR AU - Abrusán, G. AU - Grundmann, N. AU - DeMester, L. AU - Makalowski, W. PY - 2009 DA - 2009// TI - TEclass—a tool for automated classification of unknown eukaryotic transposable elements JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp084 DO - 10.1093/bioinformatics/btp084 ID - Abrusán2009 ER - TY - JOUR AU - Flicek, P. AU - Ahmed, I. AU - Amode, M. R. AU - Barrell, D. AU - Beal, K. AU - Brent, S. PY - 2013 DA - 2013// TI - Ensembl 2013 JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks1236 DO - 10.1093/nar/gks1236 ID - Flicek2013 ER - TY - JOUR AU - Kent, W. J. PY - 2002 DA - 2002// TI - BLAT--the BLAST-like alignment tool JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.229202 DO - 10.1101/gr.229202 ID - Kent2002 ER - TY - JOUR AU - Stanke, M. AU - Waack, S. PY - 2003 DA - 2003// TI - Gene prediction with a hidden Markov model and a new intron submodel JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1080 DO - 10.1093/bioinformatics/btg1080 ID - Stanke2003 ER - TY - JOUR AU - Elsik, C. G. AU - Mackey, A. J. AU - Reese, J. T. AU - Milshina, N. V. AU - Roos, D. S. AU - Weinstock, G. M. PY - 2007 DA - 2007// TI - Creating a honey bee consensus gene set JO - Genome Biol VL - 8 UR - https://doi.org/10.1186/gb-2007-8-1-r13 DO - 10.1186/gb-2007-8-1-r13 ID - Elsik2007 ER - TY - JOUR AU - Li, H. AU - Coghlan, A. AU - Ruan, J. AU - Coin, L. J. AU - Heriche, J. K. AU - Osmotherly, L. PY - 2006 DA - 2006// TI - TreeFam: a curated database of phylogenetic trees of animal gene families JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj118 DO - 10.1093/nar/gkj118 ID - Li2006 ER - TY - JOUR AU - Kinsella, R. J. AU - Kahari, A. AU - Haider, S. AU - Zamora, J. AU - Proctor, G. AU - Spudich, G. PY - 2011 DA - 2011// TI - Ensembl BioMarts: a hub for data retrieval across taxonomic space JO - Database VL - 2011 UR - https://doi.org/10.1093/database/bar030 DO - 10.1093/database/bar030 ID - Kinsella2011 ER - TY - JOUR AU - Remm, M. AU - Storm, C. E. AU - Sonnhammer, E. L. PY - 2001 DA - 2001// TI - Automatic clustering of orthologs and in-paralogs from pairwise species comparisons JO - J Mol Biol VL - 314 UR - https://doi.org/10.1006/jmbi.2000.5197 DO - 10.1006/jmbi.2000.5197 ID - Remm2001 ER - TY - JOUR AU - Sievers, F. AU - Higgins, D. G. PY - 2014 DA - 2014// TI - Clustal Omega, accurate alignment of very large numbers of sequences JO - Methods Mol Biol VL - 1079 UR - https://doi.org/10.1007/978-1-62703-646-7_6 DO - 10.1007/978-1-62703-646-7_6 ID - Sievers2014 ER - TY - JOUR AU - Suyama, M. AU - Torrents, D. AU - Bork, P. PY - 2006 DA - 2006// TI - PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl315 DO - 10.1093/nar/gkl315 ID - Suyama2006 ER - TY - JOUR AU - Castresana, J. PY - 2000 DA - 2000// TI - Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026334 DO - 10.1093/oxfordjournals.molbev.a026334 ID - Castresana2000 ER - TY - JOUR AU - Keane, T. M. AU - Creevey, C. J. AU - Pentony, M. M. AU - Naughton, T. J. AU - McLnerney, J. O. PY - 2006 DA - 2006// TI - Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified JO - BMC Evol Biol VL - 6 UR - https://doi.org/10.1186/1471-2148-6-29 DO - 10.1186/1471-2148-6-29 ID - Keane2006 ER - TY - JOUR AU - Stamatakis, A. PY - 2014 DA - 2014// TI - RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu033 DO - 10.1093/bioinformatics/btu033 ID - Stamatakis2014 ER - TY - JOUR AU - Benton, M. J. AU - Donoghue, P. C. PY - 2007 DA - 2007// TI - Paleontological evidence to date the tree of life JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msl150 DO - 10.1093/molbev/msl150 ID - Benton2007 ER - TY - JOUR AU - Li, H. AU - Durbin, R. PY - 2009 DA - 2009// TI - Fast and accurate short read alignment with Burrows–Wheeler transform JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp324 DO - 10.1093/bioinformatics/btp324 ID - Li2009 ER - TY - STD TI - Picard Tools. http://broadinstitute.github.io/picard/. Accessed 30 March 2016. UR - http://broadinstitute.github.io/picard/ ID - ref68 ER - TY - JOUR AU - McKenna, A. AU - Hanna, M. AU - Banks, E. AU - Sivachenko, A. AU - Cibulskis, K. AU - Kernytsky, A. PY - 2010 DA - 2010// TI - The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data JO - Genome Res VL - 20 UR - https://doi.org/10.1101/gr.107524.110 DO - 10.1101/gr.107524.110 ID - McKenna2010 ER - TY - JOUR AU - Liu, Z. AU - Liu, S. AU - Yao, J. AU - Bao, L. AU - Zhang, J. AU - Li, Y. PY - 2016 DA - 2016// TI - The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms11757 DO - 10.1038/ncomms11757 ID - Liu2016 ER - TY - JOUR AU - Nadachowska-Brzyska, K. AU - Li, C. AU - Smeds, L. AU - Zhang, G. AU - Ellegren, H. PY - 2015 DA - 2015// TI - Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences JO - Curr Biol VL - 25 UR - https://doi.org/10.1016/j.cub.2015.03.047 DO - 10.1016/j.cub.2015.03.047 ID - Nadachowska-Brzyska2015 ER - TY - JOUR AU - You, X. AU - Bian, C. AU - Zan, Q. AU - Xu, X. AU - Liu, X. AU - Chen, J. PY - 2014 DA - 2014// TI - Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms6594 DO - 10.1038/ncomms6594 ID - You2014 ER - TY - STD TI - Harris RS. Improved pairwise alignment of genomic DNA. Ph.D. Thesis. The Pennsylvania State University; 2007. ID - ref73 ER - TY - STD TI - FishBase. http://www.fishbase.org. Accessed 30 March 2016. UR - http://www.fishbase.org/ ID - ref74 ER - TY - JOUR AU - Loytynoja, A. PY - 2014 DA - 2014// TI - Phylogeny-aware alignment with PRANK JO - Methods Mol Biol VL - 1079 UR - https://doi.org/10.1007/978-1-62703-646-7_10 DO - 10.1007/978-1-62703-646-7_10 ID - Loytynoja2014 ER - TY - JOUR AU - Penn, O. AU - Privman, E. AU - Ashkenazy, H. AU - Landan, G. AU - Graur, D. AU - Pupko, T. PY - 2010 DA - 2010// TI - GUIDANCE: a web server for assessing alignment confidence scores JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq443 DO - 10.1093/nar/gkq443 ID - Penn2010 ER - TY - JOUR AU - Zhao, H. AU - Yang, J. R. AU - Xu, H. AU - Zhang, J. PY - 2010 DA - 2010// TI - Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msq153 DO - 10.1093/molbev/msq153 ID - Zhao2010 ER - TY - BOOK AU - Pan, H. AU - Yu, H. AU - Ravi, V. AU - Li, C. AU - Lee, A. P. AU - Lian, M. M. PY - 2016 DA - 2016// TI - Genome of the ocean sunfish (Mola mola) ID - Pan2016 ER - TY - JOUR AU - Braasch, I. AU - Gehrke, A. R. AU - Smith, J. J. AU - Kawasaki, K. AU - Manousaki, T. AU - Pasquier, J. PY - 2016 DA - 2016// TI - The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons JO - Nat Genet VL - 48 UR - https://doi.org/10.1038/ng.3526 DO - 10.1038/ng.3526 ID - Braasch2016 ER - TY - JOUR AU - Trobec, K. AU - Haehling, S. AU - Anker, S. D. AU - Lainscak, M. PY - 2011 DA - 2011// TI - Growth hormone, insulin-like growth factor 1, and insulin signaling-a pharmacological target in body wasting and cachexia JO - J Cachexia Sarcopenia Muscle VL - 2 UR - https://doi.org/10.1007/s13539-011-0043-5 DO - 10.1007/s13539-011-0043-5 ID - Trobec2011 ER - TY - JOUR AU - Biasini, M. AU - Bienert, S. AU - Waterhouse, A. AU - Arnold, K. AU - Studer, G. AU - Schmidt, T. PY - 2014 DA - 2014// TI - SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gku340 DO - 10.1093/nar/gku340 ID - Biasini2014 ER - TY - JOUR AU - Chen, F. H. AU - Rousche, K. T. AU - Tuan, R. S. PY - 2006 DA - 2006// TI - Technology Insight: adult stem cells in cartilage regeneration and tissue engineering JO - Nat Clin Pract Rheumatol VL - 2 UR - https://doi.org/10.1038/ncprheum0216 DO - 10.1038/ncprheum0216 ID - Chen2006 ER -