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Table 1 Performance of RES-Scanner compared with other methods applied to GM12878 human lymphoblastoid cell line data

From: RES-Scanner: a software package for genome-wide identification of RNA-editing sites

  All Alu Repetitive non-Alu Nonrepetitive
Total % A-to-I Total % A-to-I Total % A-to-I Total % A-to-I
Ramaswami et al. [22] 150,865 95.7 147,029 95.8 2,385 97.4 1,451 86.6
REDItools [30] 222,288 91.3 221,401 91.2 Not investigated 887 92.2
GIREMI [24] 37,591 98.6 36,131 99.0 267 83.7 1,193 82.8
RES-Scanner (pre-aligned) 151,952 96.3 147,542 96.4 3,247 97.0 1,163 87.5
RES-Scanner (raw reads) 153,848 95.8 149,710 95.9 2,794 97.8 1,344 81.3