Table 2 Comparison of genome assembly in sequenced fishes
From: High-quality genome assembly of channel catfish, Ictalurus punctatus
Species | Sequencing platform (Mb) | Assembled genome size (Mb) | scaffold N50 (kb) | contig N50 (kb) |
|---|---|---|---|---|
catfish (BGI) | Illumina | 845 | 7248 | 48.5 |
catfish (Liu’s study [1]) | Illumina, Pacbio | 942 | 7726 | 77.2 |
zebrafish | Illumina, Sanger | 1412 | 1551 | 25.0 |
Atlantic herring | Illumina | 808 | 1840 | 21.3 |
greenpuffer | Sanger | 342 | 100 | 16.0 |
medaka | Sanger | 700 | 1410 | 9.8 |
stickleback | Sanger, Illumina | 463 | 10,800 | 83.2 |
fugu | Sanger | 332 | unknown | 16.5 |
cod | 454 | 753 | 459 | 2.8 |
platyfish | 454, Illumina | 669 | 1102 | 21.0 |
lamprey | 454, Illumina | 816 | 173 | unknown |
lancelets | Illumina | 520 | unknown | unknown |
tuna | 454, Illumina | 800 | 136 | 7.6 |
mudskipper | Illumina | 983 | 2309 | 20.0 |