Skip to main content

Table 2 Statistics for ‘Golden Delicious’ genome protein-coding sequences annotation

From: Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica)

   Gene_number Avg_mRNA_length (bp) Total_exon_number Avg_exon_length (bp) Avg_cds_length (bp) Avg_exon_number Total_intron_length (bp)
De novo augustus 37693 2233.785106 203848 166.933235 902.793781 5.408113 50169056
genscan 33206 8849.329489 210077 158.970511 1005.723303 6.326477 260454787
glimmerHMM 48129 1404.407447 151751 182.492643 575.400299 3.153005 39899285
snap 73555 936.269975 219634 162.207063 484.347577 2.985983 33241152
Homolog B. oleracea 7000 2320.829429 46309 139.074802 920.059286 6.615571 9805391
  G. max 8578 2427.167172 60008 137.457522 961.593728 6.995570 12571689
  O. sativa 11000 1887.083182 61308 137.971668 768.978818 5.573455 12299148
  P. mume 9000 2623.029667 67760 135.473332 1019.963667 7.528889 14427594
  P. trichocarpa 30585 2321.131764 207830 138.869210 943.638646 6.795161 42130627
  P. persica 12733 2431.885573 93666 134.420665 988.820074 7.356161 18374553
  P. communis 34642 2833.118267 256347 129.467222 958.043242 7.399890 64956349
  V. vinifera 17175 2460.852402 118296 138.772773 955.823231 6.887686 25848876
  Z. mays 22341 2004.558569 130795 138.548645 811.130657 5.854483 26662373
RNA-seq GDflorwer1 48423 2234.847387 212811 300.027231 1318.569585 4.394833 49998557
GDflorwer2 49952 2231.126001 220057 304.286867 1340.495976 4.405369 50837822
GDflorwer3 49848 2242.481785 223056 305.307031 1366.164440 4.474723 49515976
GDleaf1 45034 2258.958920 203894 296.653634 1343.116223 4.527557 46765622
GDleaf2 44669 2300.217086 204106 298.250576 1362.795943 4.569299 47700782
GDleaf3 45220 2292.436975 206566 301.208723 1375.928372 4.568023 47304519
GDstem1 46908 2299.298840 212019 308.944807 1396.396542 4.519890 48015182
GDstem2 46271 2308.347604 209286 307.787090 1392.136090 4.523049 48368862
GDstem3 46657 2296.511542 209284 310.624348 1393.332319 4.485586 48454706
EVM   53922 1793.161066 221394 167.775983 688.857906 4.105820 59546235