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Table 2 Transcriptome assembly and annotation statistics compared with previous P. astreoides transcriptome

From: Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages

Assembly components P. astreoides + Symbiodinium sp. 2016 P. astreoides alone 2016 P. astreoides alone 2013 [3] Symbiodinium sp. alone 2016
Genes 717 454 95 294 29 422 145 570
Transcripts 867 255 129 718 30 740 186 177
GC % 44 40 42 48
Contig N10 3876 4642 1574 5230
Contig N20 2568 3321 1207 3701
Contig N30 1871 2487 949 2825
Contig N40 1386 1867 767 2236
Contig N50 1005 1358 661 1804
n under 200 0 0 2164 0
n over 1 k 145 836 27 334 3274 67 354
n over 10 k 319 58 0 260
Median contig length (bp) 389 429 418 659
Average contig length (bp) 685 811 550 1105
Maximum length (bp) 28 297 19 877 8171 28 297
Minimum length (bp) 201 201 100 201
Bases Ns 0 0 924 0
Total assembled bases 594 399 145 105 218 865 16 907 062 205 741 294
N50 (longest transcript per unigene) 763 967 640 1623
Total assembled bases (longest transcript per unigene) 430 507 117 65 529 888 15 807 055 145 440 520
No. of possible ORF 578 372 49 348 18 351 221 299
No. of transcripts with ORF 327 829 33 331 15 183 89 425
No. of all possible complete ORF 223 741 26 802 3666 124 810
No. of transcripts with complete ORF 123 339 17 277 2932 59 126
No. of transcripts with Swiss-Prot blast hit 204 071 25 384 15 492 52 308