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Table 2 Details of the four MinION sequencing runs

From: Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing

Sample

Chemistry

Basecall

Time

Read

Base

Median

Quality

Quality 2D

  

version

(hrs)

count

count (Mb)

length

mean (std)

mean (std)

Single sample 1

R7

1.4

60

38165

185

4580

4.70 (0.91)

8.96 (0.63)

Single sample 2

R7

1.4

60

7293

39

4936

4.95 (1.2)

9.34 (0.87)

Single sample 3

R7.3

1.9

36

15911

86

5242

4.58 (1.7)

9.46 (1.48)

Mixture sample

R7.3

1.10

21

5631

12

825

5.44 (2.1)

10.72(2.41)

  1. Read quality in Phred score