Table 5 Comparison of running times and maximum memory for AGOUTI and RNAPATH
From: AGOUTI: improving genome assembly and annotation using transcriptome data
Assembly | Programs | Graph buildinga | Scaffoldinga | Denoisinga | Reconciliationa | Max. memoryb |
|---|---|---|---|---|---|---|
CE1 | AGOUTI | 0.018 | 2.412 | 17.4 | 1.152 | 0.248 |
RNAPATHD | 6.342 | 130.2 | - | - | 0.421 | |
CE2 | AGOUTI | 0.012 | 0.342 | 7.2 | 0.882 | 0.23 |
RNAPATHD | 5.232 | 64.2 | - | - | 0.273 | |
CE3 | AGOUTI | 0.012 | 0.27 | 15.6 | 0.66 | 0.267 |
RNAPATHD | 5.142 | 45.6 | - | - | 0.24 | |
CE4 | AGOUTI | 0.018 | 0.21 | 5.4 | 0.588 | 0.22 |
RNAPATHD | 2.358 | 34.8 | - | - | 0.16 | |
CE5 | AGOUTI | 0.012 | 0.132 | 3.6 | 0.39 | 0.202 |
RNAPATHD | 1.278 | 16.8 | - | - | 0.161 | |
CE6 | AGOUTI | 0.0006 | 0.06 | 3 | 0.192 | 0.204 |
RNAPATHD | 0.762 | 3.6 | - | - | 0.172 | |
N2/CB | AGOUTI | 0.012 | 0.078 | 2.4 | 0.288 | 0.188 |
RNAPATHD | 0.912 | 17.4 | - | - | 0.205 | |
Lyco | AGOUTI | 0.09 | 5.4 | 87 | 4.8 | 1.389 |
RNAPATHD | 374.148 | 7,186.8 | - | - | 8.994 |