Table 3 Scaffolding accuracy of AGOUTI and RNAPATH with K = 2
From: AGOUTI: improving genome assembly and annotation using transcriptome data
Assembly | Program | Inter-chromosomal errors | Intra-chromosomal errors | No. of contigs placed repeatedly |
|---|---|---|---|---|
CE1 | AGOUTI | 2 | 2 | 0 |
RNAPATH | 6 | 7 | 12 | |
RNAPATHD | 8 | 10 | 0 | |
CE2 | AGOUTI | 2 | 0 | 0 |
RNAPATH | 8 | 14 | 1 | |
RNAPATHD | 3 | 12 | 0 | |
CE3 | AGOUTI | 0 | 1 | 0 |
RNAPATH | 3 | 10 | 11 | |
RNAPATHD | 2 | 11 | 0 | |
CE4 | AGOUTI | 1 | 0 | 0 |
RNAPATH | 7 | 5 | 10 | |
RNAPATHD | 2 | 7 | 0 | |
CE5 | AGOUTI | 0 | 0 | 0 |
RNAPATH | 1 | 2 | 0 | |
RNAPATHD | 1 | 4 | 0 | |
CE6 | AGOUTI | 1 | 0 | 0 |
RNAPATH | 6 | 4 | 0 | |
RNAPATHD | 1 | 3 | 0 | |
AGOUTI | 17 | 3 | 0 | |
N2/CB | RNAPATH | 37 | 14 | 6 |
RNAPATHD | 20 | 12 | 0 | |
AGOUTI | 213 | 12 | 0 | |
Lyco | RNAPATH | 535 | 150 | 17 |
RNAPATHD | 366 | 292 | 0 |