Fig. 6

Performance of AGOUTI scaffolding with K = 5. AGOUTI was able to scaffold hundreds to thousands of contigs, and significantly reduced the number of gene models. The least contiguous assembly has the largest number of contigs scaffolded and the largest reduction in the number of gene models. The leftmost trace represents the most contiguous assembly, and the assembly represented on the far right is the least contiguous. The number of gene models is on the y-axis. The black squares and open circles indicate the number of gene models before and after the scaffolding, respectively