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Table 5 Comparison of O. europaea with other plant species

From: Genome sequence of the olive tree, Olea europaea

Species

Number of proteins

Average transcript length (bp)

Average coding sequence length (bp)

Average exons per transcript

Average exon length (bp)

Proteins with homologs in O. europaea

O. europaea proteins with homologs in the other species

Olea europaea

56,349

3,953

1,050

4.54

315

56,349 (100 %)

56,349 (100 %)

Arabidopsis thaliana

35,378

2,341

1,234

5.89

261

23,106 (65.3 %)

32,796 (58.2 %)

Erythranthe guttata

31,861

3,378

1,351

5.77

300

24,373 (76.5 %)

42,458 (75.3 %)

Solanum lycopersicum

36,148

5,626

1,389

6.48

288

27,778 (76.8 %)

38,448 (68.2 %)

Ricinus communis

27,998

4,323

1,390

6.53

287

21,990 (78.5 %)

37,264 (66.1 %)

  1. Average of the transcript length, coding sequence, exons per transcript and exon length of O. europaea, Arabidopsis thaliana, Erythranthe guttata, Solanum lycopersicum and Ricinus communis proteomes, the number of proteins with at least one homolog in O. europaea and the number of proteins of O. europaea with at least one homolog in the other species. The longest protein isoform per gene was used for homology search