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Table 2 Summary statistics for host-filtered Platanus assemblies

From: Genomic resources and draft assemblies of the human and porcine varieties of scabies mites, Sarcoptes scabiei var. hominis and var. suis

 

Patient A

Patient B

Pig unwashed

Pig washed 1

Pig washed 2

Pig washed 3

Pig washed pooled

Host filtering using Bowtie 2 alignment

 Host-aligned read percentage

55.68 %

22.51 %

14.20 %

10.99 %

43.98 %

11.07 %

N/A

Scaffolds

 Scaffold N50

29,787

45,917

6352

6835

22,475

36,156

4883

 Largest scaffold

509386

794311

88,812

681,477

423,133

809,115

299,570

 Total assembled bases

68,937,519

61,661,613

69,459,333

68,875,212

61,832,214

56,344,534

75,837,484

 No of scaffolds

99,178

66,591

47,952

149,238

83,245

26,086

212,580

Scaffolds (≥500 bp)

 Major scaffold N50

43,122

62,417

7574

17,034

30,929

40,825

-

 Largest scaffold

509,386

794,311

88,812

681,477

423,133

809,115

-

 Total assembled bases

56,795,385

53,697,990

62,853,857

47,516,449

52,301,800

53,472,496

-

 No of scaffolds

4276

3157

17236

7586

5102

4269

-