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Table 2 De novo assembly and annotations metrics for the transcriptome of the cestode Schistocephalus solidus

From: Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite

De novo assembly

 Assembled bases

195 089 904

 Assembled transcripts

293 731

 Unigenes – Unfiltered

115 318

 Unigenes – Expression filter

12 291

 Unigenes – Expression & ORF filters (transcripts)

10 285 (24 765)

 Average transcripts per filtered unigene

2.41

 Sum of filtered transcripts (Mbp)

367.83

 Average length (bp) – Filtered transcripts (min - max : median)

2 684 (174–25 376 : 2168)

Annotation

 Unigenes with protein name

7 920 (77 %)

 Unigenes with Gene Ontology (% of unigenes)

7 323 (71 %)

 Proteins with complete ORF (% of unigenes)

20 335 (82 %)

 Unigenes/transcripts with KEGG ID (% of unigenes)

4 270/7 798 (35 %)