Table 1 N50 values and CEGMA scores for each Assembly
Species | Assembler | K-mer Value | N50 (bp) | # Contigs | CEGMA Score (Partial/Complete) |
|---|---|---|---|---|---|
O. fasciata | SOAPdenovo | 31 | 484 | 3,968,282 | 69/16 |
39 | 451 | 4,740,140 | 69/17 | ||
45 | 501 | 4,814,066 | 71/20 | ||
55 | 449 | 5,961,782 | 63/9 | ||
63 | 528 | 4,184,863 | 57/5 | ||
ABySS | 31 | 70 | 32,912,859 | 34/6 | |
39 | 99 | 24,109,265 | 32/1 | ||
45 | 116 | 19,642,981 | 26/1 | ||
55 | 146 | 18,334,263 | 0/0 | ||
63 | 166 | 13,153,732 | 0/0 | ||
Platanus | 32 | 103 | 126 | 0/0 | |
39 | 104 | 129 | 0/0 | ||
45 | 108 | 119 | 0/0 | ||
55 | 105 | 130 | 0/0 | ||
64 | 111 | 119 | 0/0 | ||
P. regularis | SOAPdenovo | 31 | 1383 | 19,728 | 1/0 |
39 | 469 | 2,348,237 | 17/1 | ||
45 | 488 | 2,596,707 | 15/0 | ||
55 | 470 | 3,424,052 | 22/1 | ||
63 | 557 | 3,006,458 | 50/2 | ||
ABySS | 31 | 70 | 14,653,947 | 12/1 | |
39 | 96 | 11,632,456 | 14/2 | ||
45 | 116 | 9,818,773 | 15/3 | ||
55 | 158 | 6,986,935 | 22/3 | ||
63 | 191 | 5,068,075 | 19/4 | ||
Platanus | 32 | 155 | 1,923,405 | 0/0 | |
39 | 157 | 2,475,110 | 0/0 | ||
45 | 161 | 2,814,106 | 0/0 | ||
55 | 158 | 3,044,990 | 0/0 | ||
64 | 143 | 3,092,862 | 0/0 | ||
A. mollis | SOAPdenovo | 31 | 847 | 2,132,880 | 77/16 |
39 | 564 | 3,162,372 | 62/12 | ||
45 | 577 | 3,457,710 | 66/13 | ||
55 | 475 | 4,839,379 | 66/17 | ||
63 | 626 | 3,712,641 | 87/18 | ||
ABySS | 31 | 76 | 19,911,844 | 44/5 | |
39 | 104 | 15,084,417 | 48/5 | ||
45 | 127 | 12,518,443 | 52/7 | ||
55 | 171 | 8,798,225 | 42/5 | ||
63 | 204 | 6,232,955 | 32/0 | ||
Platanus | 32 | 214 | 2,653,880 | 0/0 | |
39 | 182 | 3,763,387 | 0/0 | ||
45 | 164 | 4,653,306 | 0/0 | ||
55 | 104 | 102 | 0/0 | ||
64 | 106 | 99 | 0/0 |