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Table 1 N50 values and CEGMA scores for each Assembly

From: Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis

Species Assembler K-mer Value N50 (bp) # Contigs CEGMA Score (Partial/Complete)
O. fasciata SOAPdenovo 31 484 3,968,282 69/16
39 451 4,740,140 69/17
45 501 4,814,066 71/20
55 449 5,961,782 63/9
63 528 4,184,863 57/5
ABySS 31 70 32,912,859 34/6
39 99 24,109,265 32/1
45 116 19,642,981 26/1
55 146 18,334,263 0/0
63 166 13,153,732 0/0
Platanus 32 103 126 0/0
39 104 129 0/0
45 108 119 0/0
55 105 130 0/0
64 111 119 0/0
P. regularis SOAPdenovo 31 1383 19,728 1/0
39 469 2,348,237 17/1
45 488 2,596,707 15/0
55 470 3,424,052 22/1
63 557 3,006,458 50/2
ABySS 31 70 14,653,947 12/1
39 96 11,632,456 14/2
45 116 9,818,773 15/3
55 158 6,986,935 22/3
63 191 5,068,075 19/4
Platanus 32 155 1,923,405 0/0
39 157 2,475,110 0/0
45 161 2,814,106 0/0
55 158 3,044,990 0/0
64 143 3,092,862 0/0
A. mollis SOAPdenovo 31 847 2,132,880 77/16
39 564 3,162,372 62/12
45 577 3,457,710 66/13
55 475 4,839,379 66/17
63 626 3,712,641 87/18
ABySS 31 76 19,911,844 44/5
39 104 15,084,417 48/5
45 127 12,518,443 52/7
55 171 8,798,225 42/5
63 204 6,232,955 32/0
Platanus 32 214 2,653,880 0/0
39 182 3,763,387 0/0
45 164 4,653,306 0/0
55 104 102 0/0
64 106 99 0/0
  1. Assemblies deemed to be the best for each species based on N50 and CEGMA scores are in bold and were used for all downstream analyses