Table 1 List of fish species with published transcriptome data in NCBI’s SRA, and those generated by Fish-T1K

Cypriniformes

42

5

3

Cyprinodontiformes

33

2

0

Perciformes

21

9

9

Cichliformes

15

2

2

Salmoniformes

14

0

0

Order-level incertae sedis in Eupercaria

9

2

2

Pleuronectiformes

9

2

1

Osteoglossiformes

8

4

2

Siluriformes

8

9

8

Clupeiformes

6

1

1

Syngnathiformes

6

5

5

Gymnotiformes

5

2

1

Acipenseriformes

4

1

1

Anabantiformes

4

4

4

Anguilliformes

4

4

3

Centrarchiformes

4

4

3

Scombriformes

4

2

2

Beloniformes

3

2

2

Characiformes

3

6

6

Gadiformes

3

1

1

Order-level incertae sedis in Ovalentaria

3

5

5

Tetraodontiformes

3

4

4

Carangiformes

2

2

1

Amiiformes

1

1

0

Batrachoidiformes

1

1

1

Blenniiformes

1

4

4

Esociformes

1

0

0

Labriformes

1

3

2

Lepisosteiformes

1

2

2

Ophidiiformes

1

2

2

Osmeriformes

1

0

0

Pempheriformes

1

2

2

Polypteriformes

1

3

3

Spariformes

1

2

2

Synbranchiformes

1

2

2

Argentiniformes

0

1

1

Atheriniformes

0

2

2

Aulopiformes

0

2

2

Chaetodontiformes

0

1

1

Elopiformes

0

1

1

Ephippiformes

0

2

2

Galaxiiformes

0

1

1

Gobiiformes

0

3

3

Holocentriformes

0

3

3

Kurtiformes

0

2

2

Lepidogalaxiiformes

0

1

1

Lobotiformes

0

1

1

Lophiiformes

0

2

2

Mugiliformes

0

2

2

Order-level incertae sedis in Carangimorphariae

0

3

3

Order-level incertae sedis in Percomorpharia

0

12

12

Percopsiformes

0

1

1

Uranoscopiformes

0

1

1

Zeiformes

0

1

1

others (Chondrichthyes and Sarcopterygii)

17

/

/

All

242

142

128