Scalable linkage-disequilibrium-based selective sweep detection: a performance guide

GigaScience

Table 5 Parameter values of the simulations

Demographic model	Beginning time of bottleneck	Ending time of bottleneck	Relative population size during bottleneck	Relative population size after bottleneck
constant model	NA	NA	NA	NA
bottleneck1	0.100	0.1004	0.5	1.0
bottleneck2	0.015	0.0160	0.5	1.0
bottleneck3	0.015	0.0170	0.01	1.0
bottleneck4	0.015	0.0160	0.005	1.0
bottleneck5	0.015	0.0170	0.1	1.0
bottleneck6	0.010	0.0104	0.5	1
bottleneck7	0.010	0.0104	0.1	1

Time is measured backwards, from the present to the past. Thus, the ‘beginning’ of the bottleneck is the most recent time point that the population size changes. Forward in time, it corresponds to the ‘end’ of the bottleneck

ISSN: 2047-217X