Table 3 Execution times (in seconds) for the analysis of the human Chromosome 1 (1000 Genomes project) conducting calculations based on DNA and binary data
From: Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
Algorithm (threads) | DNA | Binary |
|---|---|---|
OP (1) | 417,161 | 44,195 |
F (4) | 108,850 | 14,057 |
C (4) | 129,712 | 15,266 |
M (4) | 107,326 | 12,667 |
G (4) | 115,653 | 13,474 |
F (8) | 55,025 | 8,712 |
C (8) | 67,371 | 8,142 |
M (8) | 54,663 | 6,992 |
G (8) | 58,341 | 7,492 |
F (16) | 27,853 | 5,884 |
C (16) | 37,091 | 5,145 |
M (16) | 28,316 | 4,135 |
G (16) | 30,089 | 4,567 |
F (32) | 17,683 | 4,911 |
C (32) | 21,043 | 3,630 |
M (32) | 15,395 | 2,971 |
G (32) | 17,469 | 3,262 |