ChrA | GeneA | ChrA start | ChrA end | GeneA strand | ChrB | GeneB | ChrB start | ChrB end | GeneB strand | Paper | Supported by SV data | Supported by raw reads |
|---|
1 | AHCTF1 | 247,002,400 | 247,094,726 | - | 4 | NAAA | 76,831,808 | 76,862,166 | - | Kangaspeska et al. | yes SV_ID37 | yes |
17 | STARD3 | 37,793,333 | 37,820,454 | + | 20 | DOK5 | 53,092,266 | 53,267,710 | + | Edgren et al. | no | yes |
20 | VAPB | 56,964,175 | 57,026,157 | + | 17 | IKZF3 | 37,913,968 | 38,020,441 | - | Edgren et al. | yes SV_ID124 | yes |
20 | TRPC4AP | 33,590,207 | 33,680,618 | - | 17 | MRPL45 | 36,452,989 | 36,479,101 | + | Kangaspeska et al. | no | yes |
20 | RAB22A | 56,884,771 | 56,942,563 | + | 19 | MYO9B | 17,186,591 | 17,324,104 | + | Edgren et al. | yes SV_ID145 | yes |
- Translocations identified in the standard and LFR libraries were compared to RNA sequencing identification of translocations in BT-474 from publications of Edgren et al. [7] and Kangaspeska et al. [8]. An explanation of the fields are as follows: chrA, the chromosome for the A side of the translocation; geneA, the gene affected on the A side of the translocation; chrA start, the start of the breakpoint region for the chrA side; chrA end, the end of the breakpoint region for the chrA side; geneA strand, the coding direction of the gene on the A side of the translocation; chrB, the chromosome for the B side of the translocation; geneB, the gene affected on the B side of the translocation; chrB start, the start of the breakpoint region for the chrB side; chrB end, the end of the breakpoint region for the chrB side; geneB strand, the coding direction of the gene on the B side of the translocation; paper, the publication in which the translocation was identified; supported by SV data (if there is evidence from at least one of our libraries to support this translocation a “yes” will appear in the table followed by the SV ID for our translocation, otherwise a “no” will appear); supported by raw reads (if there is evidence from at least one mate-pair read in one of our libraries to support this translocation a “yes” will appear in the table followed by the SV ID for our translocation, otherwise a “no” will appear)
