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Table 2 Potential translocations identified in BT-474

From: Whole genome sequence analysis of BT-474 using complete Genomics’ standard and long fragment read technologies

SV ID chrA chrA start chrA end chrB chrB start chrB end Breakpoint orientation Library
1 chr1 5715019 5715320 chr12 34295113 34295399 rf LFR1
2 chr1 2.32E + 08 2.32E + 08 chr14 1.06E + 08 1.06E + 08 fr STD
3 chr1 1.68E + 08 1.68E + 08 chr14 35524861 35524861 rf STD
4 chr1 1.54E + 08 1.54E + 08 chr15 71431472 71431472 rf STD
5 chr1 5735134 5736117 chr16 33921851 33923571 ff LFR1
5 chr1 5735257 5735628 chr16 33921851 33922429 ff LFR2
5 chr1 5735793 5735873 chr16 33923066 33923356 ff LFR2
5 chr1 5735820 5736219 chr16 33922686 33922846 ff LFR2
5 chr1 5735833 5736106 chr16 33922267 33922440 ff LFR2
5 chr1 5736076 5736104 chr16 33923217 33923483 ff LFR2
6 chr1 5735201 5735384 chr16 33922780 33923001 fr LFR2
6 chr1 5735268 5735489 chr16 33922912 33923205 fr LFR1
6 chr1 5735623 5736183 chr16 33921696 33922803 fr LFR1
6 chr1 5735806 5735854 chr16 33921697 33921850 fr LFR2
6 chr1 5735811 5736104 chr16 33922722 33922916 fr LFR2
7 chr1 5735044 5735977 chr16 33924087 33924848 rf LFR2
7 chr1 5735136 5735386 chr16 33924399 33925038 rf LFR1
7 chr1 5735186 5735521 chr16 33923732 33924006 rf LFR1
7 chr1 5735651 5736227 chr16 33921710 33922453 rf LFR1
7 chr1 5735793 5736102 chr16 33923138 33923604 rf LFR1
7 chr1 5735798 5735892 chr16 33924400 33924690 rf LFR1
7 chr1 5735825 5736119 chr16 33921857 33922502 rf LFR2
8 chr1 16979636 16979817 chr3 18950158 18950300 ff LFR1
9 chr1 33084225 33084414 chr3 1.19E + 08 1.19E + 08 ff LFR2
9 chr1 33084282 33084474 chr3 1.19E + 08 1.19E + 08 ff LFR1
10 chr1 16964949 16965018 chr3 49732982 49733419 rr LFR1
11 chr1 45317764 45317764 chr3 98899084 98899084 rr STD
12 chr1 1.09E + 08 1.09E + 08 chr3 1.1E + 08 1.1E + 08 rr LFR2
13 chr1 1.18E + 08 1.18E + 08 chr4 1.85E + 08 1.85E + 08 ff LFR1
13 chr1 1.18E + 08 1.18E + 08 chr4 1.85E + 08 1.85E + 08 ff LFR2
13 chr1 1.18E + 08 1.18E + 08 chr4 1.85E + 08 1.85E + 08 ff STD
14 chr1 1.92E + 08 1.92E + 08 chr4 1.8E + 08 1.8E + 08 ff STD
15 chr1 2.04E + 08 2.04E + 08 chr4 78668596 78668596 ff STD
16 chr1 2.04E + 08 2.04E + 08 chr4 79751139 79751139 ff STD
17 chr1 2.04E + 08 2.04E + 08 chr4 1.81E + 08 1.81E + 08 ff STD
18 chr1 55705456 55705813 chr4 93827471 93827698 fr LFR1
19 chr1 1.73E + 08 1.73E + 08 chr4 1.85E + 08 1.85E + 08 fr LFR2
19 chr1 1.73E + 08 1.73E + 08 chr4 1.85E + 08 1.85E + 08 fr LFR1
19 chr1 1.73E + 08 1.73E + 08 chr4 1.85E + 08 1.85E + 08 fr STD
20 chr1 1.77E + 08 1.77E + 08 chr4 11996415 11996415 fr STD
21 chr1 1.91E + 08 1.91E + 08 chr4 1.8E + 08 1.8E + 08 fr STD
22 chr1 2.32E + 08 2.32E + 08 chr4 78692986 78692986 fr STD
23 chr1 2.43E + 08 2.43E + 08 chr4 77435897 77435897 fr STD
24 chr1 2.44E + 08 2.44E + 08 chr4 1.8E + 08 1.8E + 08 fr STD
25 chr1 1.18E + 08 1.18E + 08 chr4 76245513 76245513 rf STD
26 chr1 1.5E + 08 1.5E + 08 chr4 76064378 76064378 rf STD
27 chr1 1.68E + 08 1.68E + 08 chr4 1.84E + 08 1.84E + 08 rf LFR2
27 chr1 1.68E + 08 1.68E + 08 chr4 1.84E + 08 1.84E + 08 rf LFR1
28 chr1 1.73E + 08 1.73E + 08 chr4 1.84E + 08 1.84E + 08 rf LFR1
28 chr1 1.73E + 08 1.73E + 08 chr4 1.84E + 08 1.84E + 08 rf LFR2
29 chr1 1.9E + 08 1.9E + 08 chr4 1.81E + 08 1.81E + 08 rf STD
30 chr1 1.96E + 08 1.96E + 08 chr4 1.78E + 08 1.78E + 08 rf STD
31 chr1 2.38E + 08 2.38E + 08 chr4 10923854 10923854 rf STD
32 chr1 2.47E + 08 2.47E + 08 chr4 1.84E + 08 1.84E + 08 rf STD
33 chr1 1.6E + 08 1.6E + 08 chr4 1.84E + 08 1.84E + 08 rr LFR2
33 chr1 1.6E + 08 1.6E + 08 chr4 1.84E + 08 1.84E + 08 rr LFR1
34 chr1 1.68E + 08 1.68E + 08 chr4 1.81E + 08 1.81E + 08 rr STD
34 chr1 1.68E + 08 1.68E + 08 chr4 1.81E + 08 1.81E + 08 rr LFR2
35 chr1 2.03E + 08 2.03E + 08 chr4 1.86E + 08 1.86E + 08 rr STD
36 chr1 2.12E + 08 2.12E + 08 chr4 11068353 11068353 rr STD
37 chr1 2.47E + 08 2.47E + 08 chr4 76847438 76847438 rr STD
38 chr1 24121289 24121629 chr6 33332915 33333041 rr LFR1
39 chr1 2.46E + 08 2.46E + 08 chr6 15316532 15316532 rr STD
40 chr1 39932050 39932711 chr7 1.28E + 08 1.28E + 08 fr LFR2
41 chr1 2.33E + 08 2.33E + 08 chr8 1.09E + 08 1.09E + 08 rr STD
42 chr1 86398799 86398985 chr9 1.01E + 08 1.01E + 08 fr LFR1
43 chr1 86398798 86398975 chr9 1.01E + 08 1.01E + 08 rf LFR1
43 chr1 86398885 86398990 chr9 1.01E + 08 1.01E + 08 rf LFR2
44 chr1 91852797 91853069 chrX 1.08E + 08 1.08E + 08 fr LFR2
45 chr10 37308042 37308294 chr11 80339889 80339922 ff LFR1
46 chr10 37346634 37346708 chr11 80314502 80314529 rr LFR1
47 chr10 37352123 37352151 chr11 80308433 80308539 rr LFR1
48 chr10 37358278 37358481 chr11 80304293 80304322 rr LFR1
49 chr10 91896284 91896284 chr12 48949541 48949541 rf STD
50 chr10 45423935 45424170 chr15 80737067 80737361 fr LFR1
51 chr10 14617439 14617862 chr20 48375830 48376358 ff LFR2
51 chr10 14617482 14617870 chr20 48375829 48376359 ff LFR1
52 chr10 14617547 14617844 chr20 48375844 48375915 fr LFR2
52 chr10 14617564 14617697 chr20 48379370 48379617 fr LFR1
52 chr10 14617692 14617855 chr20 48375863 48376323 fr LFR1
53 chr10 14617753 14617855 chr20 48375843 48375872 rf LFR1
54 chr10 14617325 14617830 chr20 48379454 48379795 rr LFR1
54 chr10 14617328 14617780 chr20 48379543 48379794 rr LFR2
55 chr10 1.02E + 08 1.02E + 08 chrX 90335650 90335650 fr STD
56 chr11 90074805 90074805 chr12 1.34E + 08 1.34E + 08 fr STD
57 chr11 19002870 19003273 chr14 99742364 99742854 fr LFR1
57 chr11 19003015 19003277 chr14 99742432 99742672 fr LFR2
58 chr11 20165549 20165739 chr14 99742938 99743430 rf LFR2
58 chr11 20165552 20165915 chr14 99742909 99743449 rf LFR1
59 chr11 60484539 60484539 chr15 32224148 32224148 ff STD
59 chr11 60486401 60486401 chr15 32226056 32226056 ff STD
60 chr11 356458 357242 chr15 80736711 80737504 fr LFR1
60 chr11 357798 357987 chr15 80736802 80737555 fr LFR1
61 chr11 356453 356667 chr16 57422575 57422884 rf LFR1
62 chr11 69089738 69089738 chr17 15332776 15332776 ff STD
63 chr11 83028981 83028981 chr17 41486752 41486752 fr STD
64 chr11 1.14E + 08 1.14E + 08 chr19 13813499 13813499 rf STD
65 chr11 15224406 15224520 chr19 44055845 44055982 rr LFR1
66 chr11 7393836 7393836 chr20 21102359 21102359 ff STD
67 chr11 5902563 5902802 chrX 1.48E + 08 1.48E + 08 rf LFR1
68 chr12 1.1E + 08 1.1E + 08 chr15 24519744 24519744 rf STD
69 chr12 452573 452724 chr17 36813705 36813991 ff LFR1
69 chr12 452611 452663 chr17 36813712 36813886 ff LFR2
70 chr12 452410 452681 chr17 36813885 36814117 fr LFR1
71 chr12 185129 185463 chr20 62949947 62950060 ff LFR1
71 chr12 186282 186515 chr20 62948717 62949064 ff LFR1
72 chr12 86378558 86378558 chr20 33736935 33736935 rr STD
73 chr12 6127534 6127658 chr22 17177775 17177979 fr LFR1
74 chr13 23541983 23542335 chr14 1.05E + 08 1.05E + 08 ff LFR1
74 chr13 23542172 23542381 chr14 1.05E + 08 1.05E + 08 ff LFR2
75 chr13 23542100 23542325 chr14 1.05E + 08 1.05E + 08 fr LFR1
75 chr13 23542240 23542333 chr14 1.05E + 08 1.05E + 08 fr LFR1
76 chr13 23541989 23542331 chr14 1.05E + 08 1.05E + 08 rf LFR1
77 chr13 28033720 28033934 chr14 88237607 88237796 rr LFR1
78 chr13 22378828 22379005 chr17 36680874 36680916 ff LFR2
78 chr13 22379054 22379054 chr17 36680719 36680719 ff STD
79 chr13 36547226 36547559 chr17 57361699 57361862 rr LFR1
80 chr13 49820612 49820612 chr17 74931251 74931251 rr STD
81 chr13 19275960 19275960 chr18 14358156 14358156 fr STD
82 chr13 50980006 50980186 chr20 52105309 52105592 ff LFR1
83 chr13 42998891 42999005 chr20 45810438 45810647 fr LFR2
84 chr14 20268504 20268687 chr15 22386856 22386940 fr LFR2
85 chr14 20291830 20291936 chr15 22409820 22410082 fr LFR1
86 chr14 20268232 20268636 chr15 22386664 22386879 rf LFR1
86 chr14 20268607 20269066 chr15 22386868 22387058 rf LFR2
86 chr14 20269074 20269333 chr15 22386858 22387158 rf LFR1
87 chr14 88711033 88711033 chr15 27026222 27026222 rf STD
88 chr14 36726853 36726853 chr17 46922038 46922038 rf STD
88 chr14 36726909 36727476 chr17 46922166 46922208 rf LFR2
89 chr14 90314501 90314501 chr20 45462878 45462878 rf STD
90 chr14 31150555 31150749 chr20 53380309 53380666 rr LFR2
91 chr14 89177518 89177518 chrX 1.27E + 08 1.27E + 08 fr STD
92 chr15 20485801 20486106 chr16 33376252 33376612 ff LFR1
93 chr15 80736769 80736829 chr16 86047419 86047441 rf LFR1
94 chr15 20485845 20486155 chr16 33376088 33376404 rr LFR1
95 chr15 20563679 20564143 chr17 77680247 77680760 ff LFR1
96 chr15 20563232 20563428 chr17 77680598 77680764 rf LFR1
97 chr15 20562710 20563176 chr17 77681355 77681423 rr LFR1
98 chr15 25765731 25765818 chr20 52374415 52374605 ff LFR2
99 chr15 24728638 24729126 chr20 52602846 52603206 fr LFR1
99 chr15 24728764 24728985 chr20 52603050 52603167 fr LFR2
100 chr15 24836949 24837393 chr20 52608640 52609262 fr LFR1
100 chr15 24837101 24837400 chr20 52608843 52609205 fr LFR2
101 chr15 25765047 25765694 chr20 52374394 52374795 rf LFR2
101 chr15 25765059 25765749 chr20 52374395 52374772 rf LFR1
102 chr15 25765081 25765289 chr20 52374585 52374639 rr LFR2
103 chr15 20497712 20497759 chr22 29081791 29081826 fr LFR1
103 chr15 20498161 20498285 chr22 29081672 29081823 fr LFR2
104 chr15 73192028 73192028 chrX 11725501 11725501 rf STD
105 chr16 33687791 33688498 chr17 36686929 36687323 ff LFR1
105 chr16 33687793 33688628 chr17 36686788 36687070 ff LFR2
105 chr16 33687820 33688566 chr17 36687287 36687558 ff LFR2
105 chr16 33688711 33688949 chr17 36686318 36686384 ff LFR1
105 chr16 33690641 33691077 chr17 36684052 36684801 ff LFR1
106 chr16 33708218 33708371 chr17 36655897 36655935 ff LFR2
106 chr16 33709597 33709917 chr17 36654618 36655128 ff LFR1
107 chr16 33715838 33715930 chr17 36648811 36648948 ff LFR1
107 chr16 33717810 33718019 chr17 36646876 36646932 ff LFR1
107 chr16 33722448 33722598 chr17 36642174 36642455 ff LFR2
108 chr16 33728271 33728527 chr17 36636182 36636239 ff LFR2
109 chr16 33688406 33688600 chr17 36686656 36686774 fr LFR1
110 chr16 33687774 33688478 chr17 36686570 36687084 rr LFR1
110 chr16 33688224 33689111 chr17 36686331 36686789 rr LFR2
110 chr16 33688921 33689026 chr17 36686074 36686449 rr LFR1
111 chr16 33722451 33722930 chr17 36641699 36642406 rr LFR2
111 chr16 33722452 33722565 chr17 36641896 36642074 rr LFR1
111 chr16 33723574 33723794 chr17 36640643 36640778 rr LFR1
112 chr16 33731254 33731590 chr17 36632956 36633284 rr LFR2
113 chr16 33404337 33404694 chr19 33490646 33490733 ff LFR1
114 chr16 33406683 33406798 chr19 33488693 33489123 rr LFR1
115 chr16 33950104 33950328 chrX 1.37E + 08 1.37E + 08 rf LFR2
116 chr17 58459088 58459088 chr19 17536050 17536050 fr STD
117 chr17 79759265 79759265 chr19 13827948 13827948 rf STD
118 chr17 35343594 35343697 chr20 55629651 55630116 ff LFR2
118 chr17 35343595 35343697 chr20 55629656 55630016 ff LFR1
118 chr17 35344040 35344109 chr20 55630114 55630166 ff LFR1
119 chr17 37025773 37025975 chr20 50986305 50986555 ff LFR1
119 chr17 37025774 37025907 chr20 50986270 50986504 ff LFR2
119 chr17 37026501 37026658 chr20 50986315 50986584 ff LFR2
119 chr17 37026948 37027140 chr20 50986368 50986424 ff LFR1
120 chr17 37979129 37979487 chr20 51393212 51393650 ff LFR2
121 chr17 47200252 47200570 chr20 52670606 52670990 ff LFR1
121 chr17 47200551 47200581 chr20 52670822 52670946 ff LFR2
122 chr17 37025773 37026039 chr20 50986244 50986474 fr LFR2
123 chr17 37308699 37308887 chr20 45998011 45998274 fr LFR2
124 chr17 37944301 37944887 chr20 56991287 56991886 fr LFR1
124 chr17 37944305 37944881 chr20 56991325 56991886 fr LFR2
125 chr17 50126561 50127342 chr20 56659875 56660528 fr LFR1
125 chr17 50126917 50127317 chr20 56660109 56660527 fr LFR2
126 chr17 35343665 35344256 chr20 55629529 55630497 rf LFR1
126 chr17 35343669 35344183 chr20 55629529 55630106 rf LFR2
127 chr17 36467936 36467959 chr20 56168308 56168561 rf LFR2
128 chr17 37025771 37026391 chr20 50986245 50986940 rf LFR1
128 chr17 37025771 37026159 chr20 50986245 50987008 rf LFR2
129 chr17 37199707 37199886 chr20 53865721 53865808 rf LFR2
130 chr17 37950137 37950419 chr20 51445007 51445204 rf LFR2
131 chr17 21549459 21549788 chr20 26078984 26079241 rr LFR2
132 chr17 35343685 35343955 chr20 55629543 55629778 rr LFR2
132 chr17 35343764 35343787 chr20 55629689 55629717 rr LFR1
132 chr17 35344990 35345255 chr20 55630150 55630327 rr LFR2
133 chr17 37025777 37026095 chr20 50986254 50986852 rr LFR2
133 chr17 37025782 37026005 chr20 50986252 50986500 rr LFR1
134 chr17 37308510 37309069 chr20 45999004 45999288 rr LFR2
134 chr17 37308533 37308943 chr20 45998950 45999287 rr LFR1
135 chr17 37944405 37944589 chr20 56991699 56991841 rr LFR2
136 chr17 58448378 58448378 chrX 7718236 7718236 rr STD
137 chr18 43367885 43367885 chr20 50570359 50570359 ff STD
138 chr18 14174515 14174667 chr21 15356960 15357387 ff LFR1
139 chr18 14150833 14151055 chr21 15379674 15379805 rr LFR1
140 chr18 14174298 14174539 chr21 15357069 15357326 rr LFR1
141 chr18 14473900 14474154 chr21 15053964 15054043 rr LFR2
142 chr19 17652120 17652329 chr20 55386003 55386161 ff LFR2
142 chr19 17652251 17652438 chr20 55386065 55386453 ff LFR1
143 chr19 17651835 17651994 chr20 55387244 55387326 fr LFR1
143 chr19 17651858 17652155 chr20 55386129 55386636 fr LFR1
144 chr19 17217090 17217398 chr20 56890092 56890284 rf LFR1
145 chr19 17217090 17217570 chr20 56889905 56890286 rr LFR1
146 chr19 24538478 24538792 chr21 28834528 28834780 rr LFR1
147 chr19 9948763 9948799 chr22 16103776 16103874 ff LFR1
148 chr19 9948910 9949090 chr22 16103680 16103777 rf LFR1
149 chr2 1.88E + 08 1.88E + 08 chr10 84979145 84979145 ff STD
150 chr2 2.33E + 08 2.33E + 08 chr11 43356771 43356771 fr STD
151 chr2 3931101 3931427 chr12 1.24E + 08 1.24E + 08 ff LFR1
151 chr2 3931129 3931361 chr12 1.24E + 08 1.24E + 08 ff LFR2
151 chr2 3931172 3931453 chr12 1.24E + 08 1.24E + 08 ff LFR2
152 chr2 3930891 3931629 chr12 1.24E + 08 1.24E + 08 fr LFR2
152 chr2 3931052 3931629 chr12 1.24E + 08 1.24E + 08 fr LFR1
153 chr2 3931690 3932147 chr12 1.24E + 08 1.24E + 08 rf LFR2
154 chr2 3931163 3931384 chr12 1.24E + 08 1.24E + 08 rr LFR2
155 chr2 49457015 49457015 chr14 32953403 32953403 ff STD
156 chr2 13550951 13551227 chr15 20593199 20593601 ff LFR1
157 chr2 13531819 13531839 chr15 20613163 20613338 rr LFR2
158 chr2 26214538 26214538 chr15 84212788 84212788 rr STD
159 chr2 57462432 57462432 chr18 40323965 40323965 rr STD
160 chr2 2.14E + 08 2.14E + 08 chr20 18756222 18756222 rr STD
161 chr2 95541846 95541846 chr21 9907919 9907919 fr STD
162 chr2 95546582 95546582 chr21 9903866 9903866 rf STD
163 chr2 11929934 11929973 chr4 1.62E + 08 1.62E + 08 fr LFR2
164 chr2 1.33E + 08 1.33E + 08 chr4 1.91E + 08 1.91E + 08 rf LFR1
165 chr2 1.96E + 08 1.96E + 08 chr6 88117195 88117195 fr STD
166 chr2 26673663 26673663 chr7 19518115 19518115 rr STD
167 chr2 1.33E + 08 1.33E + 08 chr8 69218921 69218921 fr STD
168 chr2 2.13E + 08 2.13E + 08 chr8 31022034 31022034 rf STD
169 chr2 27549389 27549460 chr9 1.25E + 08 1.25E + 08 ff LFR2
170 chr2 1.16E + 08 1.16E + 08 chr9 1.31E + 08 1.31E + 08 fr LFR1
170 chr2 1.16E + 08 1.16E + 08 chr9 1.31E + 08 1.31E + 08 fr LFR2
171 chr20 46597442 46598072 chrX 1.29E + 08 1.29E + 08 fr LFR2
171 chr20 46597699 46598021 chrX 1.29E + 08 1.29E + 08 fr LFR1
172 chr20 52609811 52610360 chrX 1.29E + 08 1.29E + 08 rf LFR2
173 chr21 27928545 27928545 chrX 65187504 65187504 rr STD
174 chr3 96420323 96420323 chr13 86760280 86760280 rr STD
175 chr3 86385874 86386256 chr14 86684733 86685055 ff LFR1
175 chr3 86385880 86386147 chr14 86684072 86684160 ff LFR1
175 chr3 86385893 86386230 chr14 86684069 86684158 ff LFR2
176 chr3 86385872 86385872 chr14 86684054 86684054 rf STD
176 chr3 86385893 86386680 chr14 86684053 86684588 rf LFR1
176 chr3 86385899 86386572 chr14 86684058 86684376 rf LFR2
177 chr3 90045826 90046098 chr14 91586438 91586701 rf LFR1
177 chr3 90045828 90046105 chr14 91586456 91586703 rf LFR2
177 chr3 90045832 90045832 chr14 91586507 91586507 rf STD
178 chr3 75690113 75690113 chr20 62909459 62909459 rf STD
179 chr3 655747 656029 chr21 9496278 9496583 ff LFR2
179 chr3 655838 656046 chr21 9496264 9496451 ff LFR1
180 chr3 75719349 75720145 chr4 1.91E + 08 1.91E + 08 ff LFR1
180 chr3 75719873 75720142 chr4 1.91E + 08 1.91E + 08 ff LFR2
180 chr3 75720887 75720942 chr4 1.91E + 08 1.91E + 08 ff LFR1
180 chr3 75721439 75721741 chr4 1.91E + 08 1.91E + 08 ff LFR1
181 chr3 75723970 75724039 chr4 1.91E + 08 1.91E + 08 ff LFR1
182 chr3 75747839 75748224 chr4 1.91E + 08 1.91E + 08 ff LFR1
183 chr3 75719642 75719870 chr4 1.91E + 08 1.91E + 08 rr LFR1
183 chr3 75721591 75721650 chr4 1.91E + 08 1.91E + 08 rr LFR1
184 chr3 75747286 75747286 chr4 1.54E + 08 1.54E + 08 rr STD
185 chr3 12369884 12370300 chr5 1.4E + 08 1.4E + 08 ff LFR1
186 chr3 86387776 86387933 chr5 1.07E + 08 1.07E + 08 fr LFR2
187 chr3 1.73E + 08 1.73E + 08 chr5 1.6E + 08 1.6E + 08 rr STD
188 chr3 1.11E + 08 1.11E + 08 chr8 1.29E + 08 1.29E + 08 rf LFR2
188 chr3 1.11E + 08 1.11E + 08 chr8 1.29E + 08 1.29E + 08 rf LFR1
189 chr4 3635640 3636110 chr12 54478622 54478665 fr LFR2
190 chr4 85990622 85990622 chr13 62513878 62513878 ff STD
191 chr4 76990685 76990685 chr18 38126235 38126235 fr STD
192 chr4 60751891 60751891 chr19 28845486 28845486 ff STD
193 chr4 1.58E + 08 1.58E + 08 chr6 1.56E + 08 1.56E + 08 rf STD
194 chr4 19639102 19639102 chr7 31696780 31696780 ff STD
195 chr4 45015011 45015011 chr9 68364250 68364250 rf STD
196 chr5 6531783 6531965 chr12 56387363 56387445 ff LFR2
197 chr5 8415846 8415916 chr12 1.28E + 08 1.28E + 08 ff LFR1
197 chr5 8416280 8416280 chr12 1.28E + 08 1.28E + 08 ff STD
198 chr5 86788474 86788474 chr12 86766512 86766512 rr STD
199 chr5 7299974 7300569 chr15 23105044 23105293 rr LFR2
199 chr5 7300174 7300563 chr15 23105058 23105220 rr LFR1
200 chr5 1.76E + 08 1.76E + 08 chr18 55381589 55381589 rf STD
201 chr5 21572991 21573383 chr6 57575272 57575891 fr LFR1
201 chr5 21573007 21573381 chr6 57575371 57575890 fr LFR2
202 chr5 21572935 21572983 chr6 57574921 57575108 rr LFR1
202 chr5 21572977 21573267 chr6 57575687 57575894 rr LFR1
203 chr6 5841223 5841372 chr13 21911223 21911450 ff LFR1
204 chr6 5856658 5856821 chr13 21896539 21896784 ff LFR1
205 chr6 5853402 5853892 chr13 21899030 21899151 fr LFR1
206 chr6 5850286 5850599 chr13 21901385 21901675 rr LFR1
207 chr6 382040 382402 chr16 33428252 33428505 ff LFR2
208 chr6 381822 382432 chr16 33428022 33428507 fr LFR2
208 chr6 381989 382279 chr16 33428277 33428507 fr LFR1
209 chr6 13191321 13191418 chr17 64637390 64637867 ff LFR2
210 chr6 24683309 24684093 chr22 32927903 32928520 ff LFR1
210 chr6 24683391 24684010 chr22 32927906 32928399 ff LFR2
211 chr6 24683769 24684707 chr22 32927923 32928504 fr LFR1
211 chr6 24683857 24684093 chr22 32927920 32928028 fr LFR2
211 chr6 24684004 24684224 chr22 32928267 32928449 fr LFR2
212 chr6 24684004 24684488 chr22 32927933 32928508 rf LFR1
212 chr6 24684106 24684364 chr22 32927996 32928300 rf LFR2
213 chr6 24683986 24684639 chr22 32927919 32928539 rr LFR1
213 chr6 24683986 24684642 chr22 32927923 32928539 rr LFR2
214 chr6 1.38E + 08 1.38E + 08 chr7 62982424 62982424 ff STD
215 chr6 1.35E + 08 1.35E + 08 chr7 97337901 97337901 rf STD
216 chr6 1.08E + 08 1.08E + 08 chr8 1.3E + 08 1.3E + 08 ff STD
217 chr7 44911099 44911099 chr11 73527439 73527439 ff STD
218 chr7 94842773 94842987 chr12 1.22E + 08 1.22E + 08 ff LFR1
218 chr7 94842775 94842989 chr12 1.22E + 08 1.22E + 08 ff LFR2
219 chr7 57605341 57605452 chr13 63648812 63648972 rr LFR1
220 chr7 57606301 57606665 chr13 63637531 63637816 rr LFR1
221 chr7 68915392 68915614 chr14 87380505 87380635 ff LFR1
222 chr7 68914899 68914986 chr14 87380505 87380863 rf LFR1
222 chr7 68914900 68915522 chr14 87380475 87380793 rf LFR2
222 chr7 68915002 68915002 chr14 87380338 87380338 rf STD
222 chr7 68915317 68915665 chr14 87380500 87380550 rf LFR1
223 chr7 26252426 26252890 chr15 40853843 40854161 fr LFR1
223 chr7 26252584 26252823 chr15 40853900 40854157 fr LFR2
224 chr7 26241374 26241409 chr15 40854421 40854478 rf LFR2
225 chr7 26248047 26248068 chr15 40854195 40854374 rf LFR2
226 chr7 48721650 48721717 chr15 80736884 80737051 rr LFR1
227 chr7 1.28E + 08 1.28E + 08 chr16 76865777 76865777 rr STD
228 chr7 62620648 62620648 chr19 31885728 31885728 ff STD
229 chr7 62548355 62548355 chr19 31687406 31687406 fr STD
230 chr7 70387920 70387920 chr19 18866124 18866124 rf STD
231 chr7 51723223 51723374 chr20 53953189 53953275 fr LFR2
232 chr7 1857216 1857334 chr22 23801287 23801442 ff LFR1
233 chr7 1863449 1863848 chr22 23794251 23794417 ff LFR1
233 chr7 1866697 1866826 chr22 23791255 23791393 ff LFR2
233 chr7 1866832 1867009 chr22 23791347 23791471 ff LFR1
234 chr7 1879235 1879668 chr22 23778295 23778753 ff LFR2
235 chr7 1879512 1879690 chr22 23778650 23778989 fr LFR2
236 chr7 1856208 1856668 chr22 23801668 23801951 rr LFR1
237 chr7 1879271 1879662 chr22 23778582 23778970 rr LFR1
237 chr7 1879328 1879707 chr22 23778473 23778856 rr LFR2
238 chr7 1.35E + 08 1.35E + 08 chr9 1.23E + 08 1.23E + 08 rf STD
239 chr7 54993146 54993146 chr9 19568536 19568536 rr STD
240 chr7 49199145 49199504 chrX 56881003 56881383 rf LFR2
240 chr7 49199163 49199163 chrX 56881006 56881006 rf STD
240 chr7 49199173 49199467 chrX 56881018 56881256 rf LFR1
241 chr8 6198076 6198076 chr10 27693593 27693593 ff STD
242 chr8 56402863 56403275 chr11 65046567 65046743 ff LFR2
242 chr8 56402895 56403155 chr11 65046510 65046594 ff LFR1
243 chr8 56542081 56542449 chr11 65392273 65392518 ff LFR2
244 chr8 56618489 56618658 chr11 69301454 69301749 ff LFR1
245 chr8 56626636 56627138 chr11 69075163 69075841 ff LFR2
245 chr8 56626715 56627162 chr11 69075169 69075698 ff LFR1
246 chr8 56628913 56629070 chr11 63637435 63637636 ff LFR2
247 chr8 56638956 56639544 chr11 69201605 69202126 ff LFR1
247 chr8 56639001 56639542 chr11 69201602 69202252 ff LFR2
247 chr8 56639575 56639575 chr11 69201602 69201602 ff STD
248 chr8 53545260 53545939 chr11 63501366 63501663 fr LFR1
248 chr8 53545412 53545943 chr11 63501208 63501666 fr LFR2
249 chr8 56542079 56542423 chr11 69308780 69309221 fr LFR1
249 chr8 56542247 56542426 chr11 69308909 69309226 fr LFR2
250 chr8 56592024 56592480 chr11 69239427 69239705 fr LFR1
250 chr8 56592726 56592933 chr11 69239152 69239432 fr LFR1
250 chr8 56593422 56593609 chr11 69239602 69239726 fr LFR1
251 chr8 56617861 56618657 chr11 69301020 69301802 fr LFR1
251 chr8 56618111 56618654 chr11 69301096 69301802 fr LFR2
252 chr8 56628853 56628964 chr11 63637401 63637659 fr LFR2
253 chr8 56651729 56652151 chr11 63572629 63572923 fr LFR2
253 chr8 56652180 56652180 chr11 63572962 63572962 fr STD
254 chr8 53540108 53540108 chr11 65515203 65515203 rf STD
254 chr8 53540111 53540761 chr11 65515201 65515831 rf LFR1
254 chr8 53540114 53540571 chr11 65515204 65515904 rf LFR2
255 chr8 56396567 56396986 chr11 65393113 65393461 rf LFR2
256 chr8 56419536 56419720 chr11 69011441 69011604 rf LFR2
257 chr8 56540148 56540364 chr11 69312955 69313432 rf LFR1
257 chr8 56540240 56540357 chr11 69313100 69313123 rf LFR2
258 chr8 56542225 56542349 chr11 65392321 65392431 rf LFR2
259 chr8 56574975 56575440 chr11 69322803 69322902 rf LFR1
259 chr8 56574989 56575241 chr11 69322299 69322566 rf LFR1
260 chr8 56591741 56591785 chr11 69263733 69263914 rf LFR2
261 chr8 56592013 56592173 chr11 69239328 69239428 rf LFR1
262 chr8 56628885 56628980 chr11 63637431 63637676 rf LFR2
263 chr8 56639309 56639547 chr11 69201647 69201669 rf LFR2
264 chr8 56687408 56688087 chr11 63575002 63575212 rf LFR2
264 chr8 56687458 56687964 chr11 63575000 63575180 rf LFR1
264 chr8 56687469 56687469 chr11 63575013 63575013 rf STD
265 chr8 56714805 56715355 chr11 69312481 69312733 rf LFR1
265 chr8 56714817 56715176 chr11 69312481 69312725 rf LFR2
266 chr8 53564403 53564403 chr11 64929683 64929683 rr STD
266 chr8 53564509 53564736 chr11 64929594 64929673 rr LFR1
266 chr8 53564523 53564616 chr11 64929528 64929706 rr LFR2
267 chr8 56366241 56366635 chr11 65393247 65393466 rr LFR2
268 chr8 56419535 56419894 chr11 69010974 69011951 rr LFR1
268 chr8 56419535 56420039 chr11 69011144 69011949 rr LFR2
269 chr8 56504226 56504323 chr11 69312583 69312730 rr LFR2
270 chr8 56574919 56575636 chr11 69322411 69322981 rr LFR1
270 chr8 56574928 56574928 chr11 69322992 69322992 rr STD
270 chr8 56574937 56575286 chr11 69322494 69322979 rr LFR2
271 chr8 56591968 56592652 chr11 69239154 69239756 rr LFR1
271 chr8 56591968 56592535 chr11 69239231 69239751 rr LFR2
272 chr8 56619853 56620129 chr11 63582316 63582822 rr LFR1
272 chr8 56619853 56620317 chr11 63582318 63582819 rr LFR2
272 chr8 56619862 56619862 chr11 63582835 63582835 rr STD
273 chr8 56628848 56629267 chr11 63637002 63637728 rr LFR2
273 chr8 56628852 56629331 chr11 63637182 63637728 rr LFR1
274 chr8 56642108 56642193 chr11 65392314 65392377 rr LFR2
275 chr8 56643714 56643849 chr11 65039398 65039590 rr LFR1
276 chr8 56687889 56688158 chr11 63575021 63575048 rr LFR2
277 chr8 97728261 97728261 chr12 43918028 43918028 fr STD
278 chr8 1.46E + 08 1.46E + 08 chr12 34296283 34296283 rf STD
279 chr8 15289494 15289872 chr13 74313862 74313987 rf LFR1
280 chr8 87976380 87976380 chr14 41325734 41325734 fr STD
281 chr8 28478037 28478037 chr18 30473685 30473685 rr STD
282 chr8 1E + 08 1E + 08 chr19 15711500 15711500 rr STD
283 chr9 34466629 34467226 chr10 75030572 75030835 rr LFR1
283 chr9 34466653 34466653 chr10 75030853 75030853 rr STD
283 chr9 34466688 34467009 chr10 75030571 75030836 rr LFR2
284 chr9 96384411 96384411 chr13 19645269 19645269 fr STD
285 chr9 96382829 96382829 chr13 19646432 19646432 rf STD
286 chr9 68418384 68418769 chr14 78101716 78101914 ff LFR2
286 chr9 68418458 68418714 chr14 78101720 78101914 ff LFR1
287 chr9 34467563 34467886 chr14 90356846 90357250 fr LFR2
287 chr9 34467653 34467866 chr14 90356804 90357230 fr LFR1
288 chr9 1.05E + 08 1.05E + 08 chr16 33957220 33957220 rf STD
289 chr9 1.36E + 08 1.36E + 08 chr17 67794936 67794936 ff STD
290 chr9 68792588 68792588 chr17 79312079 79312079 rf STD
291 chr9 1.24E + 08 1.24E + 08 chr20 42578457 42578457 rr STD
  1. All potential translocations identified in each library are listed. Translocations were clustered by 5 kb windows around the breakpoints to allow for comparison between different libraries. An explanation of the fields are as follows: SV ID, this is the ID for each translocation after clustering; chrA, the chromosome for the A side of the translocation; chrA start, the start of the breakpoint region for the chrA side; chrA end, the end of the breakpoint region for the chrA side; chrB, the chromosome for the B side of the translocation; chrB start, the start of the breakpoint region for the chrB side; chrB end, the end of the breakpoint region for the chrB side; breakpoint orientation, the direction of the translocation on each side of the translocation as compared to NCBI reference genome build 37, “f” represents the forward direction and “r” represents the reverse direction, the first letter is the chrA region and the second letter is the chrB region; library, the library for which each individual translocation was found