Table 1 Summary of genome annotations
From: Draft genome of the Chinese mitten crab, Eriocheir sinensis
Number | Average transcript length (bp) | Average coding sequence length (bp) | Average exons per gene | Average exon length (bp) | Average intron length (bp) | ||
|---|---|---|---|---|---|---|---|
De novo | AUGUSTUS | 14,436 | 10,104 | 1,195 | 4.97 | 240 | 2,245 |
Genescan | 29,097 | 13,045 | 1,022 | 5.01 | 203 | 2,995 | |
Homolog | H. sapiens | 5,646 | 4,752 | 922 | 3.74 | 246 | 1,398 |
C. gigas | 9,470 | 3,067 | 641 | 2.69 | 238 | 1,432 | |
C. elegans | 3,142 | 3,913 | 819 | 3.27 | 250 | 1,361 | |
D.melanogaster | 4,369 | 6,178 | 981 | 4.31 | 227 | 1,571 | |
D. pulex | 14,183 | 2,887 | 628 | 2.48 | 252 | 1,521 | |
Transcriptome | 14,123 | 11,161 | 2,223 | 6.83 | 325 | 1,532 | |
GLEAN | 7,549 | 12,742 | 1,470 | 6.36 | 230 | 2,101 | |