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Table 1 Statistics of the mapping process using 16S rDNA reads produced by MinION™

From: Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

Organism Mapped reads Mapped bases Strand mappinga Max lengthb Mean length Variants after assembly Consensus rRNAgenec Assembled 16Sd
Acinetobacter baumannii 98 99,352 0.46:0.54 1390 1013 32 1415 1529 0.93
Actinomyces odontolyticus 79 73,480 0.49:0.51 1377 930 8 1407 1528 0.92
Bacillus cereus 144 151,668 0.46:0.54 1419 1053 31 1415 1508 0.94
Bacteroides vulgatus 33 29,499 0.58:0.42 1346 893 25 1403 1510 0.93
Clostridium beijerinckii 97 99,476 0.46:0.54 1393 1025 13 1408 1505 0.94
Deinococcus radiodurans 73 69,940 0.45:0.55 1390 958 8 1398 1502 0.93
Enterococcus faecalis 149 153,581 0.50:0.50 1398 1030 8 1444 1549 0.93
Escherichia coli 167 181,084 0.45:0.55 1398 1084 0 1434 1542 0.93
Helicobacter pylori 67 62,838 0.46:0.54 1390 937 11 1411 1498 0.94
Lactobacillus gasseri 123 128,120 0.51:0.49 1407 1041 0 1467 1579 0.93
Listeria monocytogenes 139 140,478 0.50:0.50 1343 1010 13 1374 1486 0.92
Neisseria meningitidis 87 86,916 0.48:0.52 1390 999 11 1433 1544 0.93
Propionibacterium acnes 75 70,160 0.48:0.52 1375 935 21 1401 1525 0.92
Pseudomonas aeruginosa 113 120,520 0.55:0.45 1398 1066 14 1425 1536 0.93
Rhodobacter sphaeroides 95 89,750 0.52:0.48 1416 944 5 1352 1463 0.92
Staphylococcus epidermidis 164 177,084 0.51:0.49 1423 1079 0 1443 1540 0.94
Staphylococcus aureus 163 179,477 0.51:0.49 1423 1101 1 1435 1554 0.92
Streptococcus agalactiae 156 166,420 0.52:0.48 1411 1066 5 1439 1551 0.93
Streptococcus mutans 196 221,682 0.47:0.53 1411 1131 2 1440 1552 0.93
Streptococcus pneumoniae 154 168,657 0.52:0.48 1411 1095 2 1442 1560 0.92
  1. aProportion of reads mapped against the forward and complementary strand, respectively
  2. bMaximum length of reads mapped
  3. cLength of the 16S sequence used as reference
  4. dNumbers are generated from Consensus/rRNA gene ratio