Table 1 Comparison of all methods and their variants on glocal map-to-sequence alignment
Algorithm | Drosophila (A) | Drosophila (B) | Human (A) | Human (B) | ||||
|---|---|---|---|---|---|---|---|---|
S | P | S | P | S | P | S | P | |
OPTIMA | 90 | 100 | 49 | 99 | 83 | 100 | 43 | 98 |
Gentig v.2 (d) | 59 | 100 | 24 | 99 | 53 | 96 | 20 | 80 |
Gentig v.2 (tp) | 59 | 100 | 24 | 98 | 54 | 95 | 20 | 88 |
SOMA v.2 (v) | 72 | 73 | 31 | 39 | 50 | 50 | 17 | 20 |
Likelihood (d+a) | 49 | 49 | 29 | 30 | 24 | 24 | 14 | 14 |
Likelihood (d+a+t) | 64 | 65 | 38 | 39 | 33 | 34 | 18 | 19 |
Likelihood (p+a+t) | 75 | 75 | 39 | 39 | 62 | 62 | 19 | 20 |