Skip to main content

Table 1 Sequencing and data size of P. nicotianae races 0 and race 1

From: Genomes and virulence difference between two physiological races of Phytophthora nicotianae

Races Library type Instrument Fragment size (bp) Read length (bp) Data (Gb)
Before quality control After quality control
P. nicotianae race 0 Illumina paired-end Hiseq 350 100 41 34
Illumina mate pair Hiseq 2,000 100 5 3
  Illumina paired-end Miseq 500 ~300 5 a3
  SMRTbell PacBio RS 10,000 ~1,932 5 b3
P. nicotianae race 1 Illumina paired-end Hiseq 350 100 46 20
Illumina mate pair Hiseq 2,000 100 4 2
  Illumina paired-end Miseq 500 ~300 3 a2
SMRTbell PacBio RS 10,000 ~2,333 6 b4
  1. aTotal base pairs of Miseq reads after merged using Flash
  2. bPacBio reads after correction with LSC