From: Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line
MapCard ID | Fa | Input mapsb (theoretical genome coverage) | Average Argus quality score | Average DNA molecule size (kb) | Average # of fragments | Average fragment size (kb) | OPTIMA alignment rate | Yield (genome coverage)c | Average digestion ratec | Average false/ extra cut ratec | Ratio small missing fragments (≤2 kb)c |
---|---|---|---|---|---|---|---|---|---|---|---|
17182LA | (r) | 10911 (0.9×) | 0.33 | 257 | 16 | 15.7 | 0.040 | 0.04× | 0.661 | 1.288 | 0.170 |
(s) | 3744 (0.4×) | 0.33 | 351 | 20 | 17.7 | 0.040 | 0.02× | 0.628 | 1.226 | 0.190 | |
17184LA-2 | (r) | 55719 (5.7×) | 0.43 | 305 | 19 | 16.3 | 0.180 | 1.1× | 0.678 | 0.760 | 0.197 |
(s) | 28658 (3.7×) | 0.45 | 390 | 23 | 17.2 | 0.250 | 0.9× | 0.669 | 0.737 | 0.199 | |
17185LA | (r) | 56879 (5.4×) | 0.55 | 285 | 19 | 14.7 | 0.240 | 1.5× | 0.705 | 0.756 | 0.219 |
(s) | 28003 (3.4×) | 0.59 | 365 | 24 | 15.1 | 0.352 | 1.2× | 0.696 | 0.739 | 0.217 | |
17186LA-3 | (r) | 52984 (5.8×) | 0.54 | 328 | 20 | 16.0 | 0.327 | 2.0× | 0.696 | 0.677 | 0.167 |
(s) | 31588 (4.3×) | 0.56 | 404 | 25 | 16.4 | 0.423 | 1.7× | 0.688 | 0.671 | 0.163 | |
17187LA | (r) | 88730 (7.8×) | 0.45 | 264 | 18 | 14.8 | 0.115 | 1.0× | 0.692 | 0.940 | 0.195 |
(s) | 36018 (4.2×) | 0.46 | 349 | 22 | 15.8 | 0.171 | 0.7× | 0.678 | 0.919 | 0.188 | |
14593LB | (r) | 30994 (2.7×) | 0.39 | 261 | 14 | 18.9 | 0.059 | 0.2× | 0.626 | 0.847 | 0.161 |
(s) | 10944 (1.2×) | 0.39 | 337 | 17 | 20.2 | 0.086 | 0.1× | 0.597 | 0.869 | 0.151 | |
Total | (r) | 296217 (28.3×) | 0.47 | 287 | 18 | 15.7 | 0.181 | 5.7× | 0.691 | 0.774 | 0.191 |
(s) | 138955 (17.2×) | 0.50 | 372 | 23 | 16.5 | 0.271 | 4.6× | 0.682 | 0.749 | 0.188 |