Table 2 Time and memory consumption examples
Tool | Sample type | Number of reads | Computation time | Max. RAM use |
|---|---|---|---|---|
KISSPLICE | H. sapiens tissues RNA-seq | 71 million | 3 h | 8 GB |
DISCOSNP | S. cerevisiae WGS | 1.4 billion | 34 h | 6 GB |
MAPSEMBLER2 | S. cerevisiae WGS | 430 million | 24 h | 1 GB |
TAKEABREAK | S. cerevisiae WGS | 430 million | 2 h | 4 GB |
COMMET | Soil and seawater metagenomes | 71 million | 14 h | 7 GB |
LORDEC | E. coli WGS | 11 million and 0.08 million | 3.3 h | 0.66 GB |
LORDEC | S. cerevisiae WGS | 2.25 million and 0.26 million | 25 h | 0.74 GB |