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Table 1 Summary of the Colib’read tools inputs and outputs

From: Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Tool In Out
KISSPLICE One or more RNA-seq read set(s) SNPs, small indels, alternative splicing events
DISCOSNP One or more raw genomic read set(s) SNP sequences with their coverages
TAKEABREAK One or more raw genomic read set(s) Inversion breakpoints
MAPSEMBLER2 Pieces of known sequences, and associated raw read sets Validation and visualization of genome structure near a locus of interest
COMMET Several raw metagenomic complex read sets Global comparison of input sets at the read level
LORDEC Illumina and PacBio read sets Corrected PacBio read set