KISSPLICE
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One or more RNA-seq read set(s)
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SNPs, small indels, alternative splicing events
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DISCOSNP
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One or more raw genomic read set(s)
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SNP sequences with their coverages
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TAKEABREAK
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One or more raw genomic read set(s)
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Inversion breakpoints
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MAPSEMBLER2
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Pieces of known sequences, and associated raw read sets
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Validation and visualization of genome structure near a locus of interest
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COMMET
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Several raw metagenomic complex read sets
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Global comparison of input sets at the read level
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LORDEC
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Illumina and PacBio read sets
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Corrected PacBio read set
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