Table 1 Summary of the Colib’read tools inputs and outputs
Tool | In | Out |
|---|---|---|
KISSPLICE | One or more RNA-seq read set(s) | SNPs, small indels, alternative splicing events |
DISCOSNP | One or more raw genomic read set(s) | SNP sequences with their coverages |
TAKEABREAK | One or more raw genomic read set(s) | Inversion breakpoints |
MAPSEMBLER2 | Pieces of known sequences, and associated raw read sets | Validation and visualization of genome structure near a locus of interest |
COMMET | Several raw metagenomic complex read sets | Global comparison of input sets at the read level |
LORDEC | Illumina and PacBio read sets | Corrected PacBio read set |