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Table 1 Details of the FFPE hepatoblastoma datasets described in this Data Note

From: Multi-platform microRNA profiling of hepatoblastoma patients using formalin fixed paraffin embedded archival samples

Sample Patient age Tumour type + subtype
(comments)
Relapse free survival Overall survivala Pretext at diagnosis Presence/
location of phosphory-lated -catenin
β-catenin mutation Platform analysis Number of miRNAs detectedb and GSE accession number
NGS MA NS NGS
GSE62010
MA
GSE62011
NS
GSE62017
S4 2 years Epithelial/mes-enchymal + fetal 3 years 10 months 3 years 10 months (A) 3 cytoplasmic absent - 244 83 -
S5 5 months Epithelial + fetal
(cholangioblas-tic)
2 months 7 years (A) 3 cytoplasmic absent 309 118 299
S6 8 months Epithelial + fetal
(cell clusters, aberrant differentiation)
8 years 11 months 8 years 11 months (A) 3 cytoplasmic present 321 116 372
S7 10 years
6 months
Epithelial + fetal 1 year 3 months 5 years 4 months (A) 2 cytoplasmic present - - - - 216
S8 1 year
7 months
Epithelial + fetal
(fibrosis post chemo)
6 years 6 years (A) 2 cytoplasmic + nucleus absent - - - - 139
S9 2 years
4 months
Epithelial + fetal 8 years 4 months 8 years 4 months (A) 3 cytoplasmic absent - - - - 323
S10 1 year
6 months
Epithelial + fetal/
embryonal
7 years 6 months 7 years 6 months (A) 2 nucleus present - - - - 316
S11 9 months Epithelial + fetal 4 years 10 months 4 years 10 months (A) 3 - present - - - - 135
S12 1 year
8 months
Epithelial/mes- enchymal + fetal/
embryonal
9 months 9 months (D) 2 cytoplasmic absent - - - - 352
S13 2 years 5 months Epithelial + fetal 6 years 6 months 6 years 6 months (A) 3 cytoplasmic + nucleus absent - - - - 191
S14 7 months Epithelial + fetal/
embryonal
5 years 3 months 5 years 3 months (A) 2 cytoplasmic absent - - - - 411
S15 2 years
2 months
Epithelial + fetal 4 years 6 months 4 years 6 months (A) 2 cytoplasmic absent - - - - 163
S16 5 months Epithelial + fetal 11 years 11 years (A) 4 cytoplasmic + nucleus absent - - - - 265
  1. aindicates that the overall survival data was last recorded from 2007, (A) and (D) are indicative of status indicator at the time, alive and deceased respectively
  2. bindicates S4, S5, and S6 were run in replicate for the NGS and MA platform, therefore the number of miRNAs detected is an average of the replicates