Skip to main content

Table 1 Details of the FFPE hepatoblastoma datasets described in this Data Note

From: Multi-platform microRNA profiling of hepatoblastoma patients using formalin fixed paraffin embedded archival samples

Sample

Patient age

Tumour type + subtype

(comments)

Relapse free survival

Overall survivala

Pretext at diagnosis

Presence/

location of phosphory-lated -catenin

β-catenin mutation

Platform analysis

Number of miRNAs detectedb and GSE accession number

NGS

MA

NS

NGS

GSE62010

MA

GSE62011

NS

GSE62017

S4

2 years

Epithelial/mes-enchymal + fetal

3 years 10 months

3 years 10 months (A)

3

cytoplasmic

absent

✓

✓

-

244

83

-

S5

5 months

Epithelial + fetal

(cholangioblas-tic)

2 months

7 years (A)

3

cytoplasmic

absent

✓

✓

✓

309

118

299

S6

8 months

Epithelial + fetal

(cell clusters, aberrant differentiation)

8 years 11 months

8 years 11 months (A)

3

cytoplasmic

present

✓

✓

✓

321

116

372

S7

10 years

6 months

Epithelial + fetal

1 year 3 months

5 years 4 months (A)

2

cytoplasmic

present

-

-

✓

-

-

216

S8

1 year

7 months

Epithelial + fetal

(fibrosis post chemo)

6 years

6 years (A)

2

cytoplasmic + nucleus

absent

-

-

✓

-

-

139

S9

2 years

4 months

Epithelial + fetal

8 years 4 months

8 years 4 months (A)

3

cytoplasmic

absent

-

-

✓

-

-

323

S10

1 year

6 months

Epithelial + fetal/

embryonal

7 years 6 months

7 years 6 months (A)

2

nucleus

present

-

-

✓

-

-

316

S11

9 months

Epithelial + fetal

4 years 10 months

4 years 10 months (A)

3

-

present

-

-

✓

-

-

135

S12

1 year

8 months

Epithelial/mes- enchymal + fetal/

embryonal

9 months

9 months (D)

2

cytoplasmic

absent

-

-

✓

-

-

352

S13

2 years 5 months

Epithelial + fetal

6 years 6 months

6 years 6 months (A)

3

cytoplasmic + nucleus

absent

-

-

✓

-

-

191

S14

7 months

Epithelial + fetal/

embryonal

5 years 3 months

5 years 3 months (A)

2

cytoplasmic

absent

-

-

✓

-

-

411

S15

2 years

2 months

Epithelial + fetal

4 years 6 months

4 years 6 months (A)

2

cytoplasmic

absent

-

-

✓

-

-

163

S16

5 months

Epithelial + fetal

11 years

11 years (A)

4

cytoplasmic + nucleus

absent

-

-

✓

-

-

265

  1. aindicates that the overall survival data was last recorded from 2007, (A) and (D) are indicative of status indicator at the time, alive and deceased respectively
  2. bindicates S4, S5, and S6 were run in replicate for the NGS and MA platform, therefore the number of miRNAs detected is an average of the replicates
Back to article page

GigaScience

ISSN: 2047-217X

Contact us