Table 1 Human Samples used in this study
From: Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat
Sample Name | Description | GEO Accession |
|---|---|---|
293 | HEK-293 embryonic kidney cell line. ATCC CRL1573 | GSE67856 |
40424 | Normal fibroblast cell line | GSE67856 |
910046 | Normal fibroblast cell line | GSE67856 |
12A-CD19 | Normal Fluorescent Activated Cell Sorted (FACS) CD19 positive bone marrow cells from individual 12A | GSE67856 |
12A-CD33 | Normal Fluorescent Activated Cell Sorted (FACS) CD33 positive bone marrow cells from individual 12A | GSE67856 |
12A-CD34 | Normal Fluorescent Activated Cell Sorted (FACS) CD34 positive bone marrow cells from individual 12A | GSE67856 |
12A-CD45 | Normal Fluorescent Activated Cell Sorted (FACS) CD45 positive bone marrow cells from individual 12A | GSE67856 |
6-MDA453 | MDA-MB-453 metastatic breast cancer cell line. ATCC HTB-131 | GSE67856 |
6C-CD19 | Normal Fluorescent Activated Cell Sorted (FACS) CD19 positive bone marrow cells from individual 6C | GSE67856 |
6C-CD33 | Normal Fluorescent Activated Cell Sorted (FACS) CD33 positive bone marrow cells from individual 6C | GSE67856 |
6C-CD34 | Normal Fluorescent Activated Cell Sorted (FACS) CD34 positive bone marrow cells from individual 6C | GSE67856 |
6C-CD45 | Normal Fluorescent Activated Cell Sorted (FACS) CD45 positive bone marrow cells from individual 6C | GSE67856 |
9A-CD19 | Normal Fluorescent Activated Cell Sorted (FACS) CD19 positive bone marrow cells from individual 9A | GSE67856 |
9A-CD33 | Normal Fluorescent Activated Cell Sorted (FACS) CD33 positive bone marrow cells from individual 9A | GSE67856 |
9A-CD34 | Normal Fluorescent Activated Cell Sorted (FACS) CD34 positive bone marrow cells from individual 9A | GSE67856 |
9A-CD45 | Normal Fluorescent Activated Cell Sorted (FACS) CD45 positive bone marrow cells from individual 9A | GSE67856 |
9A-Whole-Blood | Whole blood sample from individual 9A | GSE67856 |
BRL | Normal lymphoblast cell line. | GSE67856 |
CaCo | Caco2 Colon cancer cell line. ATCC HTB37 | GSE67856 |
DG75 | Lymphoblast cancer cell line. ATCC CRL-2625 | GSE67856 |
EKVX | Cancer Cell Line | GSE67856 |
HELA | Cancer cell line. ATCC CCL-2 | GSE67856 |
HEPG2 | Liver cancer cell line. ATCC HB-8065 | GSE67856 |
HT1080 | Cancer cell line. ATCC CCL121 | GSE67856 |
HTB22-Col | MCF7 breast cancer cell line. ATCC HTB22 | GSE67856 |
JWL | Normal lymphoblast cell line. | GSE67856 |
K562 | CML cancer cell line. ATCC CCL-243 | GSE67856 |
Sample29 | Cell Line | GSE71804 |
MB231BAG | Breast cancer cell line. ATCC HTB-26 | GSE67856 |
MCF7 | Breast cancer cell line. ATCC HTB22 | GSE67856 |
NALM6 | Leukaemia cell line. ACC 128 | GSE67856 |
NCCIT | Embryonic carcinoma cell line. ATCC CRL-2073 | GSE67856 |
OVCAR8 | Cancer cell line | GSE67856 |
SKNAS | Neuroblastoma cancer cell line. ATCC CRL2137 | GSE67856 |
U231 | Cancer cell line | GSE67856 |
Sample1 | Human normal colon tissue | GSE71804 |
Sample2 | Human colon tumor | GSE71804 |
Sample3 | Human normal colon tissue | GSE71804 |
Sample4 | Human colon tumor | GSE71804 |
Sample5 | Human normal colon tissue | GSE71804 |
Sample6 | Human colon tumor | GSE71804 |
Sample7 | Human normal colon tissue | GSE71804 |
Sample8 | Human colon tumor | GSE71804 |
Sample9 | Human normal colon tissue | GSE71804 |
Sample10 | Human colon tumor | GSE71804 |
Sample11 | Human normal colon tissue | GSE71804 |
Sample12 | Human colon tumor | GSE71804 |
Sample13 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample14 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample15 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample16 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample17 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample18 | Pooled human cancer and blood cell DNA | GSE71804 |
Sample19 | Artificially methylated human DNA | GSE71804 |
Sample20 | Artificially methylated human DNA | GSE71804 |
Sample21 | Artificially methylated human DNA | GSE71804 |
Sample22 | Artificially methylated human DNA | GSE71804 |
Sample23 | Artificially methylated human DNA | GSE71804 |
Sample24 | Artificially methylated human DNA | GSE71804 |
Sample25 | Human leukemia cell line | GSE71804 |
Sample26 | Human leukemia cell line | GSE71804 |
Sample27 | Human leukemia cell line | GSE71804 |
Sample28 | Human leukemia cell line | GSE71804 |
468-C1-3-9_S40 | MDA-468 cell line, control 1 | GSE71804 |
468-C2-3-9_S48 | MDA-468 cell line, control 2 | GSE71804 |
468-S1-3-9_S56 | MDA-468 cell line + EGF 1 | GSE71804 |
468-S2-3-9_S64 | MDA-468 cell line + EGF 2 | GSE71804 |
ET-C1-3-9_S71 | PMC42-ET cell line, control 1 | GSE71804 |
ET-C2-3-9_S79 | PMC42-ET cell line, control 2 | GSE71804 |
ET-S1-3-9_S87 | PMC42-ET cell line, +EGF 1 | GSE71804 |
ET-S2-3-9_S95 | PMC42-ET cell line, +EGF 2 | GSE71804 |
LA-C1-3-9_S8 | PMC42-LA cell line, control 1 | GSE71804 |
LA-C3-3-9_S16 | PMC42-LA cell line, control 2 | GSE71804 |
LA-S1-3-9_S24 | PMC42-LA cell line, +EGF 1 | GSE71804 |
LA-S2-3-9_S32 | PMC42-LA cell line, +EGF 2 | GSE71804 |
PMC42ET-72-C_S31 | PMC42-ET cell line, control 72 h | GSE71804 |
PMC42ET-72 h-EGF_S39 | PMC42-ET cell line, +EGF 72 h | GSE71804 |
PMC42ET-9d-C_S47 | PMC42-ET cell line, control 9 days | GSE71804 |
PMC42ET-9d-EGF_S55 | PMC42-ET cell line, +EGF 9 days | GSE71804 |
PMC42ET-9d-TGFb_S63 | PMC42-ET cell line, +TGFb 9 days | GSE71804 |
PMC42LA-72 h-C_S86 | PMC42-LA cell line, control 72 h | GSE71804 |
PMC42LA-72 h-EGF_S94 | PMC42-LA cell line, +EGF 72 h | GSE71804 |
PMC42LA-9d-C_S7 | PMC42-LA cell line, control 9 days | GSE71804 |
PMC42LA-9d-EGF_S15 | PMC42-LA cell line, +EGF 9 days | GSE71804 |
PMC42LA-9d-TGFb_S23 | PMC42-LA cell line, +TGFb 9 days | GSE71804 |