De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping

Table 1 Standard contiguity metrics

Name	#scaff	#scaff > 1000	N50	max_scf	asm_lgth	asm_lgth >1000
Chr1-7	15	15	3706655	4993496	17319971	17319971
Chr1-4	12	12	3706655	4993496	14763326	14763326
soapdenovo	66606	396	263103	1117059	25625475	13038098
allpaths	352	349	610180	1845683	13885397	13882423
abyss	6523	1061	46286	581122	18806852	18097355
HGAP	308	308	147223	776319	14719721	14719721
FALCON	410	405	30567	152911	10731982	10728849
AHA	241	241	201733	758433	15105135	15105135
pacBioToCA	1579	1579	157083	692841	17014896	17014896

Columns from left to right: name of the assembly, number of scaffolds, number of scaffolds after removing those under 1 kbp, N50, N80, the longest scaffold, assembly length, assembly length after removing scaffolds under 1 kbp

ISSN: 2047-217X