Table 4 Tophat2 alignments of simulated and real reads

Original

-

81,994,413

82.540

99.391

-

SEECER

31

85,374,347

85.943

99.988

99.619

Hshrec

-

77,488,558

78.004

99.888

97.886

Coral

31

84,662,510

85.226

99.745

99.494

Musket

27

84,892,466

85.458

99.906

99.739

BFC

27

84,844,168

85.409

99.918

99.889

Rcorrector

27

85,033,277

85.599

99.986

99.970

Peach

Original

-

24,775,386

63.717

99.198

-

SEECER

27

29,056,747

74.728

99.879

99.199

Hshrec

-

24,496,308

63.000

99.265

96.027

Coral

23

28,974,141

74.516

99.316

99.027

Musket

27

28,345,203

72.898

99.256

99.677

BFC

31

26,553,943

68.291

99.278

99.777

Rcorrector

23

30,563,388

78.603

99.833

99.628

Lung

Original

-

110,771,941

97.757

99.717

-

SEECER

23

111,261,651

98.189

99.855

98.239

Hshrec

-

102,121,932

90.124

99.781

89.786

Coral

23

111,107,133

98.053

99.809

98.330

Musket

27

110,907,828

97.877

99.781

98.698

BFC

23

111,427,773

98.336

99.824

99.359

Rcorrector

23

111,198,587

98.134

99.830

99.599

Geuvadis

Original

-

59,130,806

90.949

99.477

-

SEECER

23

61,514,024

94.614

99.837

98.530

Hshrec

23

51,669,686

79.473

99.709

87.924

Coral

23

61,399,007

94.437

99.717

98.049

Musket

23

60,450,316

92.978

99.652

97.900

BFC

23

61,870,897

95.163

99.775

98.790

Rcorrector

23

61,641,866

94.811

99.814

99.227