Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

GigaScience

Table 2 Accuracy of six error correction methods on 100 million simulated reads, by expression level of transcripts. k-mer sizes used are those in Table 1

Program	Recall	Precision	F-score
Low expression
SEECER	32.78	90.54	48.14
HShrec	24.77	0.81	1.56
Coral	31.88	64.60	42.69
Musket	13.88	33.94	19.71
BFC	25.18	58.37	35.19
Rcorrector	39.40	86.62	54.16
Medium expression
SEECER	86.58	97.05	91.51
HShrec	70.57	19.57	30.64
Coral	89.07	85.12	87.05
Musket	72.02	92.16	80.86
BFC	89.12	96.88	92.84
Rcorrector	87.73	99.66	93.31
High expression
SEECER	87.39	96.90	91.90
HShrec	69.22	41.67	52.02
Coral	47.59	85.17	61.06
Musket	80.50	98.53	88.61
BFC	77.47	98.35	86.67
Rcorrector	89.42	99.91	94.37

ISSN: 2047-217X