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Table 1 Accuracy of the six error correction methods on the 100 million simulated reads

From: Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

Program

k

Recall

Precision

F-score

Run time

Memory

     

(min)

(GB)

SEECER

31

87.13

96.93

91.77

177

61

HShrec

-

69.53

31.74

43.58

13641

30

Coral

31

58.35

85.14

69.25

1391

81

Musket

27

78.24

96.90

86.58

152

4

BFC

27

80.45

97.91

88.32

111

6

Rcorrector

27

88.94

99.84

94.07

118

5

  1. Best performers in each category are highlighted in italic. All programs were run multithreaded, with eight threads
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