From: Evaluating a multigene environmental DNA approach for biodiversity assessment
16S | 18S | trnL | ITS | COI | COI-spun | Total | |
---|---|---|---|---|---|---|---|
Raw reads | 1,000,881 | 602,973 | 1,319,595 | 377,403 | 113,427 | 116,638 | 3,530,917 |
Post-QC reads | 768,208 | 539,832 | 185,314 | 137,518 | 84,832 | 65,786 | 1,781,490 |
Post-QC unique sequences | 337,849 | 150,121 | 105,377 | 50,166 | 51,737 | 25,708 | 720,958 |
Filtered reads | 563,985 | 520,826 | 170,706 | 132,885 | 83,747 | 63,596 | 1,535,745 |
Filtered unique sequences | 192,151 | 138,200 | 100,041 | 48,118 | 50,832 | 23,692 | 553,034 |
Chimeras + | 147,652 | 12,130 | 5,554 | 2,110 | 1,013 | 2,094 | 170,553 |
OTUs | 15,039 | 6,440 | 43,223 | 6,957 | 14,248 | 2,784 | 88,691 ∗∗ |
Singleton | 8,427 | 2,419 | 26,537 | 3,848 | 6,056 | 1,497 | 48,784 ∗∗ |
α diversity | 3,108.50 | 1,353.70 | 4,961.40 | 935.00 | 1,786.60 | 325.40 | N/C ∗ |
Effective α diversity | 295.22 | 69.48 | 1,293.63 | 77.77 | 631.77 | 17.23 | N/C ∗ |
No. of phyla ++ | 43 | 58 | 49 | 35 | 60 | 31 | 109 |