Table 5 Breakdown of repeat content of the Pogona vitticeps genome derived from RepeatMasker analysis
Category | Repbase TEs | TE proteins | de novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % of genome | Length (bp) | % of genome | Length (bp) | % of genome | Length (bp) | % of genome | |
DNA | 25,035,683 | 1.43 | 6,450,126 | 0.37 | 56,943,252 | 3.26 | 70,663,766 | 4.04 |
LINE | 124,676,466 | 7.13 | 132,747,210 | 7.60 | 191,015,014 | 10.93 | 213,508,152 | 12.22 |
SINE | 20,281,741 | 1.16 | - | 0.00 | 54,941,907 | 3.14 | 57,180,364 | 3.27 |
LTR | 7,613,766 | 0.44 | 17,931,338 | 1.03 | 16,104,019 | 0.92 | 28,021,391 | 1.60 |
Other | 24,327 | 0.00 | - | 0.00 | - | 0.00 | 24,327 | 0.00 |
Unknown | 761,119 | 0.04 | - | 0.00 | 283,563,847 | 16.23 | 284,276,315 | 16.27 |
Total | 174,011,206 | 9.96 | 157,050,977 | 8.99 | 627,828,869 | 35.93 | 657,625,603 | 37.63 |