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Table 5 Breakdown of repeat content of the Pogona vitticeps genome derived from RepeatMasker analysis

From: High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

Category Repbase TEs TE proteins de novo Combined TEs
Length (bp) % of genome Length (bp) % of genome Length (bp) % of genome Length (bp) % of genome
DNA 25,035,683 1.43 6,450,126 0.37 56,943,252 3.26 70,663,766 4.04
LINE 124,676,466 7.13 132,747,210 7.60 191,015,014 10.93 213,508,152 12.22
SINE 20,281,741 1.16 - 0.00 54,941,907 3.14 57,180,364 3.27
LTR 7,613,766 0.44 17,931,338 1.03 16,104,019 0.92 28,021,391 1.60
Other 24,327 0.00 - 0.00 - 0.00 24,327 0.00
Unknown 761,119 0.04 - 0.00 283,563,847 16.23 284,276,315 16.27
Total 174,011,206 9.96 157,050,977 8.99 627,828,869 35.93 657,625,603 37.63
  1. Abbreviations: LINE long interspersed nuclear element, LTR long terminal repeat, SINE short interspersed nuclear element, TE transposable element