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Table 3 Number of predicted genes with RNA-seq signals

From: High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps

Specimen ID (tissue ID) Accession number Tissue Genotype Phenotype RPKM >0 RPKM >1 RPKM >5
Number Ratio (%) Number Ratio (%) Number Ratio (%)
1003347859 ERR753524 Brain ZZ Intersex 17,049 87.85 14,403 74.22 11,244 57.94
(AA45100)
1003338787 ERR753525 Brain ZZ Male 16,934 87.26 14,467 74.55 11,359 58.53
(AA60463)
1003348364 ERR753526 Brain ZW Female 17,121 88.23 14,526 74.85 11,474 59.13
(AA60435)
1003347859 ERR753527 Testes ZZ Intersex 16,874 86.95 13,874 71.49 10,784 55.57
(AA45100)
1003347859 ERR753528 Ovary ZZ Intersex 16,827 86.71 12,952 66.74 10,421 53.7
(AA45100)
1003338787 ERR753529 Testes ZZ Male 17,963 92.56 14,951 77.04 11,311 58.29
(AA60463)
1003348364 ERR753530 Ovary ZW Female 17,188 88.57 13,634 70.26 10,946 56.41
(AA60435)
Combined      18,833 97.05 17,646 90.93 15,974 82.31
  1. Gene expression levels were measured as RPKM (reads per kilobase of gene per million mapped reads). Ratios are based on a total of 19,406 annotated protein-coding genes