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Table 2 Coverage from additional resources in updated PFPDB

From: The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches

 

Sequence coverage (%)*

GO coverage (%)†

Swiss-Prot-GO

94.50

60.27

HAMAP

58.35

3.55

InterPro

95.75

10.59

PFAM

92.34

6.47

PRINTS

22.26

3.09

ProDom

5.39

1.18

ProSite

56.45

2.53

SMART

23.25

1.26

TIGRFam

49.92

4.78

PIRSF

18.38

4.29

Reactome

1.46

0.01

ALL

98.42

60.83

  1. *Sequence coverage is the percentage of sequences in Swiss-Prot annotated with at least one GO term after addition of translated terms from the format in column 1. †GO coverage is the percentage of terms in the GO vocabulary represented in Swiss-Prot after addition of translated terms from the resource in column 1
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