Tool and references | Description | URL |
---|---|---|
Archive Viewer [224] | Web graphical interface to make contigs and trace data changes in the National Center for Biotechnology Information (NCBI) | http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi? |
CBrowse [225] | SAM/BAM-based contig web browser for transcriptome assembly visualization and analysis | |
Consed [76] | Assembly finishing package; NGS compatible | |
ContigScape [226] | A Cytoscape plugin facilitating microbial genome gap closing | |
DNASTAR Lasergene [227] | Analysis suite with an assembly package | |
EagleView [228] | An information-rich viewer for genome assemblies with data integration capability | http://www.niehs.nih.gov/research/resources/software/biostatistics/eagleview/ |
A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools | ||
Hawkeye [229] | An interactive visual analytics tool for genome assemblies. Detection of anomalies in data and visual identification and correction of assembly errors | |
Tablet [230] | A lightweight, high-performance graphical viewer for NGS assemblies and alignments |