Skip to main content

Table 1 Transcriptome assembly and annotation statistics for F. arisanus

From: Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression

Number of read pairs used in assembly (SRA accession number)

 

Larvae (SRA: SRX689040)

53 174 809

Pupae (SRA: SRX689038)

54 026 754

Adult male (SRA: SRX689037)

53 724 417

Adult female (SRA: SRX689041)

49 823 168

Total

210 749 148

Normalized read pairs (in silico normalization)

12 214 054

Unfiltered assembly

 

Number of unigenes

57577

N50 unigene length (longest transcript/unigene) (bp)

2162

Sum longest transcript/unigene (Mb)

52.23

Number of transcripts

86118

N50 transcript length (bp)

3174

Sum transcript length (Mb)

117.14

Transcripts per unigene

1.50

GC %

40.45

Filtered de novo assembly

 

Number of unigenes

8307

N50 unigene length (longest transcript/unigene) (bp)

4751

Sum longest transcript/unigene (Mb)

27.13

Number of transcripts

15346

N50 transcript length (bp)

4570

Sum transcript length (Mb)

50.62

Isoforms per unigene

1.85

GC %

41.37

N50 protein length (amino acids)

282

Number of proteins with complete ORF (%)

11115 (72.4)

Annotation statistics

 

Number of proteins with Pfam domains identified

11978

Number of proteins with gene ontology terms

9938

Number of proteins with gene names

14600