TY - JOUR AU - Weiland, P. PY - 2010 DA - 2010// TI - Biogas production: current state and perspectives JO - Appl Microbiol Biotechnol VL - 85 UR - https://doi.org/10.1007/s00253-009-2246-7 DO - 10.1007/s00253-009-2246-7 ID - Weiland2010 ER - TY - STD TI - Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, et al. Supporting data and materials for “Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant”. GigaScience Database. 2015. http://dx.doi.org/10.5524/100151 UR - http://dx.doi.org/10.5524/100151 ID - ref2 ER - TY - JOUR AU - Jaenicke, S. AU - Ander, C. AU - Bekel, T. AU - Bisdorf, R. AU - Dröge, M. AU - Gartemann, K. H. PY - 2011 DA - 2011// TI - Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0014519 DO - 10.1371/journal.pone.0014519 ID - Jaenicke2011 ER - TY - JOUR AU - Wirth, R. AU - Kovács, E. AU - Maróti, G. AU - Bagi, Z. AU - Rákhely, G. AU - Kovács, K. L. PY - 2012 DA - 2012// TI - Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing JO - Biotechnol Biofuels VL - 5 UR - https://doi.org/10.1186/1754-6834-5-41 DO - 10.1186/1754-6834-5-41 ID - Wirth2012 ER - TY - JOUR AU - Zakrzewski, M. AU - Goesmann, A. AU - Jaenicke, S. AU - Jünemann, S. AU - Eikmeyer, F. AU - Szczepanowski, R. PY - 2012 DA - 2012// TI - Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing JO - J Biotechnol. VL - 158 UR - https://doi.org/10.1016/j.jbiotec.2012.01.020 DO - 10.1016/j.jbiotec.2012.01.020 ID - Zakrzewski2012 ER - TY - JOUR AU - Stolze, Y. AU - Zakrzewski, M. AU - Maus, I. AU - Eikmeyer, F. AU - Jaenicke, S. AU - Rottmann, N. PY - 2015 DA - 2015// TI - Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions JO - Biotechnol Biofuels VL - 8 UR - https://doi.org/10.1186/s13068-014-0193-8 DO - 10.1186/s13068-014-0193-8 ID - Stolze2015 ER - TY - JOUR AU - Schlüter, A. AU - Bekel, T. AU - Diaz, N. N. AU - Dondrup, M. AU - Eichenlaub, R. AU - Gartemann, K. H. PY - 2008 DA - 2008// TI - The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology JO - J Biotechnol VL - 136 UR - https://doi.org/10.1016/j.jbiotec.2008.05.008 DO - 10.1016/j.jbiotec.2008.05.008 ID - Schlüter2008 ER - TY - JOUR AU - Gubler, U. AU - Hoffman, B. J. PY - 1983 DA - 1983// TI - A simple and very efficient method for generating cdna libraries JO - Gene VL - 25 UR - https://doi.org/10.1016/0378-1119(83)90230-5 DO - 10.1016/0378-1119(83)90230-5 ID - Gubler1983 ER - TY - JOUR AU - Bolger, A. M. AU - Lohse, M. AU - Usadel, B. PY - 2014 DA - 2014// TI - Trimmomatic: a flexible trimmer for Illumina sequence data JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu170 DO - 10.1093/bioinformatics/btu170 ID - Bolger2014 ER - TY - JOUR AU - Boisvert, S. AU - Raymond, F. AU - Godzaridis, E. AU - Laviolette, F. AU - Corbeil, J. PY - 2012 DA - 2012// TI - Ray Meta: scalable de novo metagenome assembly and profiling JO - Genome Biol VL - 13 UR - https://doi.org/10.1186/gb-2012-13-12-r122 DO - 10.1186/gb-2012-13-12-r122 ID - Boisvert2012 ER - TY - JOUR AU - Langmead, B. AU - Salzberg, S. L. PY - 2012 DA - 2012// TI - Fast gapped-read alignment with Bowtie 2 JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.1923 DO - 10.1038/nmeth.1923 ID - Langmead2012 ER - TY - JOUR AU - Li, H. AU - Handsaker, B. AU - Wysoker, A. AU - Fennell, T. AU - Ruan, J. AU - Homer, N. PY - 2009 DA - 2009// TI - The sequence alignment/map format and SAMtools JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp352 DO - 10.1093/bioinformatics/btp352 ID - Li2009 ER - TY - JOUR AU - Hyatt, D. AU - LoCascio, P. F. AU - Hauser, L. J. AU - Uberbacher, E. C. PY - 2012 DA - 2012// TI - Gene and translation initiation site prediction in metagenomic sequences JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts429 DO - 10.1093/bioinformatics/bts429 ID - Hyatt2012 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Sato, Y. AU - Kawashima, M. AU - Furumichi, M. AU - Tanabe, M. PY - 2014 DA - 2014// TI - Data, information, knowledge and principle: back to metabolism in KEGG JO - Nucleic Acids Res. VL - 42 UR - https://doi.org/10.1093/nar/gkt1076 DO - 10.1093/nar/gkt1076 ID - Kanehisa2014 ER - TY - JOUR AU - Camacho, C. AU - Coulouris, G. AU - Avagyan, V. AU - Ma, N. AU - Papadopoulos, J. AU - Bealer, K. PY - 2009 DA - 2009// TI - BLAST+: architecture and applications JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-421 DO - 10.1186/1471-2105-10-421 ID - Camacho2009 ER - TY - JOUR AU - Quinlan, A. R. AU - Hall, I. M. PY - 2010 DA - 2010// TI - BEDTools: a flexible suite of utilities for comparing genomic features JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq033 DO - 10.1093/bioinformatics/btq033 ID - Quinlan2010 ER - TY - STD TI - Kohrs F, Wolter S, Benndorf D, Heyer R, Hoffmann M, Rapp E, et al. Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities. Proteomics. 2015. doi:10.1002/pmic.201400557. UR - http://dx.doi.org/10.1002/pmic.201400557 ID - ref17 ER - TY - STD TI - Bremges A, Belmann P, Sczyrba A. GitHub Repository. https://github.com/metagenomics/2015-biogas-cebitec. UR - https://github.com/metagenomics/2015-biogas-cebitec ID - ref18 ER - TY - STD TI - DockerHub Registry. https://registry.hub.docker.com/u/metagenomics/2015-biogas-cebitec. UR - https://registry.hub.docker.com/u/metagenomics/2015-biogas-cebitec ID - ref19 ER -