Table 1 Deep-sequencing statistics of single cells amplified by different kits
Sample index | Number of mapped bases (bp) | Read mapping ratio (%) | Read duplication ratio (%) | GC content (%) | Mean depth (X) | Genome coverage (%) |
|---|---|---|---|---|---|---|
MDA-2_46 | 109,113,164,019 | 98.42 | 2.44 | 43.63 | 38.20 | 94.30 |
MDA-2_47 | 82,746,143,862 | 98.49 | 1.73 | 42.74 | 28.95 | 99.63 |
MDA-2_66 | 102,165,179,471 | 98.54 | 6.52 | 40.66 | 35.84 | 99.24 |
MDA-3_45 | 52,911,771,602 | 99.09 | 6.17 | 39.40 | 18.52 | 94.35 |
DOP-1_97 | 8,294,107,956 | 86.18 | 39.24 | 40.65 | 3.00 | 23.23 |
SW480-1 | 55,385,452,648 | 94.34 | 7.50 | 42.95 | 19.45 | 91.33 |
SW480-2 | 57,344,758,117 | 94.69 | 7.51 | 42.86 | 20.15 | 91.63 |
SW480-3 | 66,569,935,382 | 93.54 | 19.64 | 40.40 | 23.42 | 83.33 |
SW480-4 | 78,746,822,579 | 92.56 | 21.83 | 39.91 | 27.76 | 70.88 |
SW480-5 | 40,966,360,470 | 89.53 | 7.05 | 40.36 | 14.50 | 74.87 |
SW480-HEC | 104,576,495,349 | 96.49 | 3.82 | 42.84 | 36.59 | 99.01 |
SW480-SCD | 88,079,534,311 | 91.39 | 3.43 | 39.42 | 30.99 | 99.13 |
YH-mix | 109,269,489,080 | 95.97 | 10.77 | 41.39 | 38.30 | 99.68 |