Table 1 Table depicting the structured word list for given protocol steps (fragmentation, adapter-ligation, enrichment)
From: Investigation into the annotation of protocol sequencing steps in the sequence read archive
Protocol step structured word lists | Â | Â |
|---|---|---|
Fragmentation | Adapter-ligation | Enrichment |
shear | adapter | clone% |
restriction | ligat% | clonin% |
digest | blunt% | vector% |
fragment | phosphorylat% | pcr |
breaks | overhang | amplif% |
acoustic | t4-pnk | polymerase |
nebulisation | t4 | taq |
nebulization | pnk | phusion |
nebuliz | kinase | temperat% |
nebulis | a-tail | thermal% |
sonic | Â | anneal% |
| Â | Â | denature% |