Figure 1
From: BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ
BioMAJ2Galaxy architecture: BioMAJ fetches data from external online repositories. Post-processes are in charge of formatting the data in various formats. They then invoke Galaxy data managers using the Galaxy API via the BioBlend Python library. Alternatively, it is possible to invoke a post-process that adds reference data to the Galaxy data libraries. The injected reference data can then be used directly in tools or visualizations, and/or can be accessed in data libraries. When an obsolete databank version is removed, BioMAJ remove-processes are launched to remove any reference to the corresponding reference data in the Galaxy data tables or data libraries.