Table 1 Restriction enzymes evaluated for compatibility with the Ostrich genome
From: Improving the ostrich genome assembly using optical mapping data
Enzyme | Usable % 5-20 kb | Usable % 6-12 kb | Usable % 6-15 kb | #Frags >100 kb | Avg. frag. size (kb) | Max. frag. size (kb) |
|---|---|---|---|---|---|---|
Afl II | 11.46 | 4.78 | 4.60 | 1 | 3.90 | 67.77 |
BamH I | 95.20 | 86.52 | 77.07 | 6 | 8.00 | 127.15 |
Kpn I | 96.77 | 87.02 | 62.77 | 14 | 10.39 | 148.23 |
Nco I | 63.32 | 34.18 | 33.67 | 0 | 4.81 | 74.89 |
Nhe I | 88.66 | 63.85 | 63.26 | 0 | 6.19 | 84.12 |
Bgl II | 0.99 | 0.36 | 0.36 | 0 | 3.08 | 36.92 |
Spe I | 69.60 | 33.80 | 32.55 | 1 | 5.66 | 105.87 |
Xba I | 12.20 | 4.63 | 4.46 | 0 | 3.95 | 59.07 |