TY - JOUR AU - Seeley, E. H. AU - Caprioli, R. M. PY - 2012 DA - 2012// TI - 3D imaging by mass spectrometry: a new frontier JO - Anal Chem VL - 84 UR - https://doi.org/10.1021/ac2032707 DO - 10.1021/ac2032707 ID - Seeley2012 ER - TY - JOUR AU - Stoeckli, M. AU - Chaurand, P. AU - Hallahan, D. E. AU - Caprioli, R. M. PY - 2001 DA - 2001// TI - Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues JO - Nat Med VL - 7 UR - https://doi.org/10.1038/86573 DO - 10.1038/86573 ID - Stoeckli2001 ER - TY - JOUR AU - Watrous, J. D. AU - Alexandrov, T. AU - Dorrestein, P. C. PY - 2011 DA - 2011// TI - The evolving field of imaging mass spectrometry and its impact on future biological research JO - J Mass Spectrom VL - 46 UR - https://doi.org/10.1002/jms.1876 DO - 10.1002/jms.1876 ID - Watrous2011 ER - TY - JOUR AU - Watrous, J. D. AU - Dorrestein, P. C. PY - 2011 DA - 2011// TI - Imaging mass spectrometry in microbiology JO - Nat Rev Microbiol VL - 9 UR - https://doi.org/10.1038/nrmicro2634 DO - 10.1038/nrmicro2634 ID - Watrous2011 ER - TY - JOUR AU - Stoeckli, M. AU - Staab, D. AU - Staufenbiel, M. AU - Wiederhold, K. -. H. AU - Signor, L. PY - 2002 DA - 2002// TI - Molecular imaging of amyloid beta peptides in mouse brain sections using mass spectrometry JO - Anal Biochem VL - 311 UR - https://doi.org/10.1016/S0003-2697(02)00386-X DO - 10.1016/S0003-2697(02)00386-X ID - Stoeckli2002 ER - TY - JOUR AU - Karas, M. AU - Hillenkamp, F. PY - 1988 DA - 1988// TI - Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons JO - Anal Chem VL - 60 UR - https://doi.org/10.1021/ac00171a028 DO - 10.1021/ac00171a028 ID - Karas1988 ER - TY - JOUR AU - Karas, M. AU - Bachmann, D. AU - Bahr, U. AU - Hillenkamp, F. PY - 1987 DA - 1987// TI - Matrix-assisted ultraviolet laser desorption of non-volatile compounds JO - Int J Mass Spectrom Ion Processes VL - 78 UR - https://doi.org/10.1016/0168-1176(87)87041-6 DO - 10.1016/0168-1176(87)87041-6 ID - Karas1987 ER - TY - JOUR AU - Takats, Z. AU - Wiseman, J. M. AU - Gologan, B. AU - Cooks, R. G. PY - 2004 DA - 2004// TI - Mass spectrometry sampling under ambient conditions with desorption electrospray ionization JO - Science VL - 306 UR - https://doi.org/10.1126/science.1104404 DO - 10.1126/science.1104404 ID - Takats2004 ER - TY - JOUR AU - Alexandrov, T. PY - 2012 DA - 2012// TI - MALDI imaging mass spectrometry: statistical data analysis and current computational challenges JO - BMC Bioinformatics VL - 13 ID - Alexandrov2012 ER - TY - JOUR AU - Jones, E. A. AU - Remoortere, A. AU - Zeijl, R. J. AU - Hogendoorn, P. C. AU - Bovée, J. V. AU - Deelder, A. M. PY - 2011 DA - 2011// TI - Multiple statistical analysis techniques corroborate intratumor heterogeneity in imaging mass spectrometry datasets of myxofibrosarcoma JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0024913 DO - 10.1371/journal.pone.0024913 ID - Jones2011 ER - TY - JOUR AU - Alexandrov, T. AU - Becker, M. AU - Guntinas-Lichius, O. AU - Ernst, G. AU - Eggeling, F. PY - 2013 DA - 2013// TI - MALDI-imaging segmentation is a powerful tool for spatial functional proteomic analysis of human larynx carcinoma JO - J Cancer Res Clin Oncol VL - 139 UR - https://doi.org/10.1007/s00432-012-1303-2 DO - 10.1007/s00432-012-1303-2 ID - Alexandrov2013 ER - TY - JOUR AU - Alexandrov, T. AU - Kobarg, J. H. PY - 2011 DA - 2011// TI - Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr246 DO - 10.1093/bioinformatics/btr246 ID - Alexandrov2011 ER - TY - JOUR AU - Palmer, A. D. AU - Bunch, J. AU - Styles, I. B. PY - 2013 DA - 2013// TI - Randomized approximation methods for the efficient compression and analysis of hyperspectral data JO - Anal Chem VL - 85 UR - https://doi.org/10.1021/ac400184g DO - 10.1021/ac400184g ID - Palmer2013 ER - TY - JOUR AU - Schramm, T. AU - Hester, A. AU - Klinkert, I. AU - Both, J. -. P. AU - Heeren, R. AU - Brunelle, A. PY - 2012 DA - 2012// TI - imzML—a common data format for the flexible exchange and processing of mass spectrometry imaging data JO - J Proteomics VL - 75 UR - https://doi.org/10.1016/j.jprot.2012.07.026 DO - 10.1016/j.jprot.2012.07.026 ID - Schramm2012 ER - TY - STD TI - Oetjen J, Veselkov K, Watrous J, McKenzie JS, Becker M, Hauberg-Lotte L, et al. Supporting materials for “Benchmark datasets for 3D MALDI- and DESI-Imaging Mass Spectrometry.” GigaScience Database. 2015; http://dx.doi.org/10.5524/100131 UR - http://dx.doi.org/10.5524/100131 ID - ref15 ER - TY - STD TI - The HDF group: http://www.hdfgroup.org/HDF5/ (1997) Accessed 27 Mar 2015. UR - http://www.hdfgroup.org/HDF5/ ID - ref16 ER - TY - JOUR AU - Oetjen, J. AU - Aichler, M. AU - Trede, D. AU - Strehlow, J. AU - Berger, J. AU - Heldmann, S. PY - 2013 DA - 2013// TI - MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation JO - J Proteomics VL - 90 UR - https://doi.org/10.1016/j.jprot.2013.03.013 DO - 10.1016/j.jprot.2013.03.013 ID - Oetjen2013 ER - TY - JOUR AU - Yang, Y. -. L. AU - Xu, Y. AU - Straight, P. AU - Dorrestein, P. C. PY - 2009 DA - 2009// TI - Translating metabolic exchange with imaging mass spectrometry JO - Nat Chem Biol VL - 5 UR - https://doi.org/10.1038/nchembio.252 DO - 10.1038/nchembio.252 ID - Yang2009 ER - TY - JOUR AU - Watrous, J. D. AU - Phelan, V. V. AU - Hsu, C. -. C. AU - Moree, W. J. AU - Duggan, B. M. AU - Alexandrov, T. PY - 2013 DA - 2013// TI - Microbial metabolic exchange in 3D JO - ISME J VL - 7 UR - https://doi.org/10.1038/ismej.2012.155 DO - 10.1038/ismej.2012.155 ID - Watrous2013 ER - TY - JOUR AU - Gerbig, S. AU - Golf, O. AU - Balog, J. AU - Denes, J. AU - Baranyai, Z. AU - Zarand, A. PY - 2012 DA - 2012// TI - Analysis of colorectal adenocarcinoma tissue by desorption electrospray ionization mass spectrometric imaging JO - Anal Bioanal Chem VL - 403 UR - https://doi.org/10.1007/s00216-012-5841-x DO - 10.1007/s00216-012-5841-x ID - Gerbig2012 ER - TY - STD TI - MALDI MSI Interest Group: Msimaging. http://www.maldi-msi.org (2011). Accessed 27 Mar 2015. UR - http://www.maldi-msi.org ID - ref21 ER - TY - STD TI - McKenzie JS: 3D Massomics Github repository. https://github.com/jsmckenzie/3DMassomics (2014) Accessed 27 Mar 2015. UR - https://github.com/jsmckenzie/3DMassomics ID - ref22 ER - TY - JOUR AU - Veselkov, K. A. AU - Mirnezami, R. AU - Strittmatter, N. AU - Goldin, R. D. AU - Kinross, J. AU - Speller, A. V. PY - 2014 DA - 2014// TI - Chemo-informatic strategy for imaging mass spectrometry-based hyperspectral profiling of lipid signatures in colorectal cancer JO - Proc Natl Acad Sci U S A VL - 111 UR - https://doi.org/10.1073/pnas.1310524111 DO - 10.1073/pnas.1310524111 ID - Veselkov2014 ER - TY - JOUR AU - Rohner, T. C. AU - Staab, D. AU - Stoeckli, M. PY - 2005 DA - 2005// TI - MALDI mass spectrometric imaging of biological tissue sections JO - Mech Ageing Dev VL - 126 UR - https://doi.org/10.1016/j.mad.2004.09.032 DO - 10.1016/j.mad.2004.09.032 ID - Rohner2005 ER - TY - JOUR AU - Klinkert, I. AU - Chughtai, K. AU - Ellis, S. R. AU - Heeren, R. PY - 2014 DA - 2014// TI - Methods for full resolution data exploration and visualization for large 2D and 3D mass spectrometry imaging datasets JO - Int Journal Mass Specrom VL - 362 UR - https://doi.org/10.1016/j.ijms.2013.12.012 DO - 10.1016/j.ijms.2013.12.012 ID - Klinkert2014 ER - TY - JOUR AU - Robichaud, G. AU - Garrard, K. P. AU - Barry, J. A. AU - Muddiman, D. C. PY - 2013 DA - 2013// TI - MSiReader: an open-source interface to view and analyze high resolving power MS imaging files on Matlab platform JO - J Am Soc Mass Spectrom VL - 24 UR - https://doi.org/10.1007/s13361-013-0607-z DO - 10.1007/s13361-013-0607-z ID - Robichaud2013 ER - TY - STD TI - Race AM, Stylers, IB, Bunch, J.: imzMLConverter. www.imzmlconverter.co.uk (2012) Accessed 27 Mar 2015. UR - http://www.imzmlconverter.co.uk ID - ref27 ER - TY - JOUR AU - Race, A. M. AU - Styles, I. B. AU - Bunch, J. PY - 2012 DA - 2012// TI - Inclusive sharing of mass spectrometry imaging data requires a converter for all JO - J Proteomics VL - 75 UR - https://doi.org/10.1016/j.jprot.2012.05.035 DO - 10.1016/j.jprot.2012.05.035 ID - Race2012 ER -